Detailed information of component protein
Summary
| Component ID | T6CP003901 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS00381  (Type i1) |
| Strain | Xenorhabdus bovienii SS-2004 |
| Replicon | chromosome |
| Sequence | Protein sequence (166 a.a.); Nucleotide sequence (498 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | XBJ1_RS01150 |
| Coordinate (Strand) | 270061..270558 (+) |
| NCBI ID | WP_012986876.1 |
| RefSeq | NC_013892 |
| Uniprot ID | A0A077P2K0_XENBV, A0A077PJA8_XENBV, A0A077PCN8_XENBV, D3UYN6_XENBS |
| KEGG ID | xbo:XBJ1_0263 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 1.2e-55 | 8..159 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-165 | MSKNSPGSVAPKERINIKYVPNTGDQTAEVELPLNLLVVGDLKGKKEDTPIEERQTVSVNKNNFNAVMNEANINLTFNVPNRLDEKNEEDMPVNLEIKSLSDFSPDNIAKKVPELNKLLELREALVALKGPLGNIPAFRTRLQSLLDDESVREQLLKELEIVNKK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9844 | - | - |
Protein sequence: 166 a.a.
>T6CP003901 NC_013892:270061-270558 [Xenorhabdus bovienii SS-2004] [TssB]
MSKNSPGSVAPKERINIKYVPNTGDQTAEVELPLNLLVVGDLKGKKEDTPIEERQTVSVNKNNFNAVMNEANINLTFNVP
NRLDEKNEEDMPVNLEIKSLSDFSPDNIAKKVPELNKLLELREALVALKGPLGNIPAFRTRLQSLLDDESVREQLLKELE
IVNKK*
MSKNSPGSVAPKERINIKYVPNTGDQTAEVELPLNLLVVGDLKGKKEDTPIEERQTVSVNKNNFNAVMNEANINLTFNVP
NRLDEKNEEDMPVNLEIKSLSDFSPDNIAKKVPELNKLLELREALVALKGPLGNIPAFRTRLQSLLDDESVREQLLKELE
IVNKK*
Nucleotide sequence: 498 bp
>T6CP003901 NC_013892:270061-270558 [Xenorhabdus bovienii SS-2004] [TssB]
ATGAGTAAGAATAGTCCAGGTAGCGTAGCTCCGAAAGAAAGAATTAATATTAAGTATGTTCCGAATACGGGTGACCAGAC
CGCAGAAGTCGAATTACCGTTGAATCTTCTGGTTGTCGGTGATTTGAAAGGAAAGAAGGAAGATACGCCAATTGAAGAAC
GGCAAACAGTTTCAGTCAATAAGAACAATTTCAATGCCGTAATGAATGAGGCGAACATCAATCTGACTTTTAACGTCCCT
AATCGTCTTGATGAAAAAAATGAAGAAGACATGCCTGTTAATCTGGAAATTAAATCACTGAGTGATTTTTCACCGGATAA
TATCGCAAAAAAAGTGCCTGAATTAAATAAACTTCTGGAACTGCGTGAGGCATTGGTTGCACTAAAAGGCCCTCTGGGAA
ATATCCCTGCATTTCGTACTCGCTTGCAGTCGCTTCTGGATGATGAATCCGTGCGTGAGCAACTCCTGAAAGAACTTGAA
ATCGTCAATAAAAAATAA
ATGAGTAAGAATAGTCCAGGTAGCGTAGCTCCGAAAGAAAGAATTAATATTAAGTATGTTCCGAATACGGGTGACCAGAC
CGCAGAAGTCGAATTACCGTTGAATCTTCTGGTTGTCGGTGATTTGAAAGGAAAGAAGGAAGATACGCCAATTGAAGAAC
GGCAAACAGTTTCAGTCAATAAGAACAATTTCAATGCCGTAATGAATGAGGCGAACATCAATCTGACTTTTAACGTCCCT
AATCGTCTTGATGAAAAAAATGAAGAAGACATGCCTGTTAATCTGGAAATTAAATCACTGAGTGATTTTTCACCGGATAA
TATCGCAAAAAAAGTGCCTGAATTAAATAAACTTCTGGAACTGCGTGAGGCATTGGTTGCACTAAAAGGCCCTCTGGGAA
ATATCCCTGCATTTCGTACTCGCTTGCAGTCGCTTCTGGATGATGAATCCGTGCGTGAGCAACTCCTGAAAGAACTTGAA
ATCGTCAATAAAAAATAA