Detailed information of component protein


Summary

Component ID T6CP003901
Component protein type TssB
T6SS ID (Type) T6SS00381 experimental (Type i1)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (166 a.a.); Nucleotide sequence (498 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) XBJ1_RS01150
Coordinate (Strand) 270061..270558 (+)
NCBI ID WP_012986876.1
RefSeq NC_013892
Uniprot ID A0A077P2K0_XENBV, A0A077PJA8_XENBV, A0A077PCN8_XENBV, D3UYN6_XENBS
KEGG ID xbo:XBJ1_0263
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 1.2e-55 8..159

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-165 MSKNSPGSVAPKERINIKYVPNTGDQTAEVELPLNLLVVGDLKGKKEDTPIEERQTVSVNKNNFNAVMNEANINLTFNVPNRLDEKNEEDMPVNLEIKSLSDFSPDNIAKKVPELNKLLELREALVALKGPLGNIPAFRTRLQSLLDDESVREQLLKELEIVNKK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9844 - -



  Protein sequence: 166 a.a.    

>T6CP003901 NC_013892:270061-270558 [Xenorhabdus bovienii SS-2004] [TssB]
MSKNSPGSVAPKERINIKYVPNTGDQTAEVELPLNLLVVGDLKGKKEDTPIEERQTVSVNKNNFNAVMNEANINLTFNVP
NRLDEKNEEDMPVNLEIKSLSDFSPDNIAKKVPELNKLLELREALVALKGPLGNIPAFRTRLQSLLDDESVREQLLKELE
IVNKK*

  Nucleotide sequence: 498 bp    

>T6CP003901 NC_013892:270061-270558 [Xenorhabdus bovienii SS-2004] [TssB]
ATGAGTAAGAATAGTCCAGGTAGCGTAGCTCCGAAAGAAAGAATTAATATTAAGTATGTTCCGAATACGGGTGACCAGAC
CGCAGAAGTCGAATTACCGTTGAATCTTCTGGTTGTCGGTGATTTGAAAGGAAAGAAGGAAGATACGCCAATTGAAGAAC
GGCAAACAGTTTCAGTCAATAAGAACAATTTCAATGCCGTAATGAATGAGGCGAACATCAATCTGACTTTTAACGTCCCT
AATCGTCTTGATGAAAAAAATGAAGAAGACATGCCTGTTAATCTGGAAATTAAATCACTGAGTGATTTTTCACCGGATAA
TATCGCAAAAAAAGTGCCTGAATTAAATAAACTTCTGGAACTGCGTGAGGCATTGGTTGCACTAAAAGGCCCTCTGGGAA
ATATCCCTGCATTTCGTACTCGCTTGCAGTCGCTTCTGGATGATGAATCCGTGCGTGAGCAACTCCTGAAAGAACTTGAA
ATCGTCAATAAAAAATAA