Detailed information of component protein


Summary

Component ID T6CP003906
Component protein type TssK
T6SS ID (Type) T6SS00381 experimental (Type i1)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (451 a.a.); Nucleotide sequence (1353 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS01185
Coordinate (Strand) 277191..278543 (+)
NCBI ID WP_012986883.1
RefSeq NC_013892
Uniprot ID D3UYP3_XENBS
KEGG ID xbo:XBJ1_0270
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2.4e-151 19..445
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-450 MPGKNRVIWHEGLFIKPQHFQQQQKHNDYLAHSLVSVLAAYGHGFSSLSINQDLLNLGRIGITEASGIMQDGTIFSAPSQDLLPKPLDIESVNDLKSKDIYLALPMSSDTIREIADKEAEMQSAVRYRELPSDVRDLHTKGGDSFALNLAQLTPVLMQGSEDMSAYTAIPLCRIKEKQKDGTIVLDSEFIPTCLSIFVADKLRRFMVEIDGLLTERSRTLAKRIGSPGQQGVADVAEFMMLQLLNRVQPLFNHYAKQTVLHPLHLYTQLLQTCGELRTFTDASRLPGNVLAYDHNNLTDTFQDAMHAIRDALNVVLTPRATSIVLKQNEGGIRVATLHDNDLLRKAEFVLAISASTPQEQLRRQFVQQTKVTSMEKIRDLVSVQLPGVPLIALSAAPRQLPYHSGYTYFRLDQKSPAWKEIQQGNSIAFHVSGDFPDLDMQLWAIRGGKE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9932 - -


  Protein sequence: 451 a.a.    

>T6CP003906 NC_013892:277191-278543 [Xenorhabdus bovienii SS-2004] [TssK]
MPGKNRVIWHEGLFIKPQHFQQQQKHNDYLAHSLVSVLAAYGHGFSSLSINQDLLNLGRIGITEASGIMQDGTIFSAPSQ
DLLPKPLDIESVNDLKSKDIYLALPMSSDTIREIADKEAEMQSAVRYRELPSDVRDLHTKGGDSFALNLAQLTPVLMQGS
EDMSAYTAIPLCRIKEKQKDGTIVLDSEFIPTCLSIFVADKLRRFMVEIDGLLTERSRTLAKRIGSPGQQGVADVAEFMM
LQLLNRVQPLFNHYAKQTVLHPLHLYTQLLQTCGELRTFTDASRLPGNVLAYDHNNLTDTFQDAMHAIRDALNVVLTPRA
TSIVLKQNEGGIRVATLHDNDLLRKAEFVLAISASTPQEQLRRQFVQQTKVTSMEKIRDLVSVQLPGVPLIALSAAPRQL
PYHSGYTYFRLDQKSPAWKEIQQGNSIAFHVSGDFPDLDMQLWAIRGGKE*

  Nucleotide sequence: 1353 bp    

>T6CP003906 NC_013892:277191-278543 [Xenorhabdus bovienii SS-2004] [TssK]
ATGCCAGGCAAAAATCGGGTGATTTGGCACGAAGGATTGTTCATCAAGCCACAACATTTTCAACAACAACAAAAACATAA
TGATTATCTGGCTCATAGCCTCGTATCGGTGTTGGCCGCTTATGGTCACGGTTTCAGCTCCTTAAGCATCAATCAGGATC
TGCTCAATTTAGGGCGCATCGGCATTACCGAAGCCAGCGGCATCATGCAGGATGGCACGATATTCTCTGCACCCAGCCAA
GATCTGCTGCCAAAACCGCTGGACATCGAAAGCGTCAATGACCTGAAAAGCAAAGACATCTATCTGGCATTACCAATGTC
CAGCGATACCATTCGGGAAATTGCTGACAAGGAAGCGGAAATGCAAAGCGCGGTACGTTATCGGGAACTGCCGAGCGATG
TCCGTGACCTGCATACCAAGGGTGGCGATTCCTTTGCCCTGAACCTTGCGCAATTGACGCCGGTTCTGATGCAAGGCTCC
GAAGATATGAGTGCTTACACGGCGATCCCGCTGTGCCGTATCAAAGAAAAACAGAAGGATGGCACTATCGTTCTGGATAG
CGAATTTATTCCGACCTGTCTGTCTATCTTTGTCGCTGACAAGTTAAGACGTTTTATGGTGGAAATCGACGGCCTGCTGA
CTGAACGCTCAAGAACACTGGCCAAACGCATTGGCTCACCGGGTCAGCAGGGCGTTGCGGATGTTGCGGAGTTCATGATG
CTTCAATTGTTGAACCGCGTGCAACCTCTGTTCAACCATTACGCAAAACAGACTGTCCTGCACCCGCTGCATTTATATAC
CCAACTGCTCCAGACCTGCGGTGAGCTGAGAACCTTCACCGATGCGAGTCGCTTACCGGGGAATGTGCTGGCGTATGACC
ACAATAATCTGACGGATACTTTCCAGGACGCGATGCATGCCATTCGTGATGCACTGAACGTTGTTCTGACACCGCGTGCA
ACGTCAATTGTCCTGAAACAGAACGAAGGTGGTATCCGCGTGGCAACGCTCCACGACAACGATCTGCTGCGTAAAGCCGA
ATTTGTACTGGCTATCAGTGCAAGTACGCCGCAGGAGCAATTACGTCGTCAGTTCGTGCAGCAAACCAAAGTCACCTCGA
TGGAGAAAATCCGCGATCTGGTCAGCGTTCAGTTACCGGGTGTGCCACTGATTGCATTATCCGCGGCTCCGCGTCAGCTG
CCGTATCACTCTGGATACACCTACTTCCGTCTGGATCAGAAGAGTCCGGCATGGAAAGAGATCCAGCAGGGGAATTCCAT
CGCATTCCACGTATCAGGGGATTTCCCTGACTTAGATATGCAGCTCTGGGCTATCAGGGGCGGTAAGGAATAA