Detailed information of component protein


Summary

Component ID T6CP008856
Component protein type TssA
T6SS ID (Type) T6SS00381 experimental (Type i1)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (464 a.a.); Nucleotide sequence (1392 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS01220
Coordinate (Strand) 288584..289975 (+)
NCBI ID WP_012986890.1
RefSeq NC_013892
Uniprot ID D3UYQ0_XENBS
KEGG ID xbo:XBJ1_0277
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VasL PF12486.10 5.1e-50 289..435
ImpA_N PF06812.14 3.3e-18 12..112
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-236 MSEHPENLIIRAGGSPQNLPEFAVIRDEINKISHPAQPEVNWVLVESLSLTLFRRNGVDLQTAIYYTLARMQLNGLAGFTEGCELLAGVIVSEWDALWPPQPAVRTDLLEWFHTRTGSQLRQMDFGTGDLRMIYRAERALQLIIDRLQQSDLKRLPRVENLLWFFQNAAKKLEKPRPAAKPVQSPVQMPPLVYLSQSDTEPEIPPPSAPPRPDRPPEADSPRVRVQFPEPPRGWNA
Transmembrane helix 237-259 WQGFGLGAVLGLLVLVGGWLLFY
Inside 260-463 KPLQQQLSAITASPAGARLAWLTEPALAGYQGQLDRLAETPLLATWDAARTLTGTAAQQWPDSAEQKNATHQWTQAMTARIDSIPLKGSWHTTRDQLQQLADKILLQERTRGSFTLSYLKTAVYDLQRSHGSEVPLEELLRQLNGRVVNGEPVPPVLLKGIDDRFNALLGRYDRLRQAAENPAEKQAGKQTTHHESTVIPDGGH


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9938 - -


  Protein sequence: 464 a.a.    

>T6CP008856 NC_013892:288584-289975 [Xenorhabdus bovienii SS-2004] [TssA]
MSEHPENLIIRAGGSPQNLPEFAVIRDEINKISHPAQPEVNWVLVESLSLTLFRRNGVDLQTAIYYTLARMQLNGLAGFT
EGCELLAGVIVSEWDALWPPQPAVRTDLLEWFHTRTGSQLRQMDFGTGDLRMIYRAERALQLIIDRLQQSDLKRLPRVEN
LLWFFQNAAKKLEKPRPAAKPVQSPVQMPPLVYLSQSDTEPEIPPPSAPPRPDRPPEADSPRVRVQFPEPPRGWNAWQGF
GLGAVLGLLVLVGGWLLFYKPLQQQLSAITASPAGARLAWLTEPALAGYQGQLDRLAETPLLATWDAARTLTGTAAQQWP
DSAEQKNATHQWTQAMTARIDSIPLKGSWHTTRDQLQQLADKILLQERTRGSFTLSYLKTAVYDLQRSHGSEVPLEELLR
QLNGRVVNGEPVPPVLLKGIDDRFNALLGRYDRLRQAAENPAEKQAGKQTTHHESTVIPDGGH*

  Nucleotide sequence: 1392 bp    

>T6CP008856 NC_013892:288584-289975 [Xenorhabdus bovienii SS-2004] [TssA]
ATGAGCGAACACCCTGAGAATTTAATCATCCGGGCCGGCGGCAGTCCGCAGAATCTGCCGGAATTTGCGGTTATCCGCGA
CGAAATCAACAAAATCAGCCACCCGGCGCAGCCGGAAGTGAACTGGGTGCTGGTGGAATCGCTGTCACTGACCCTGTTCC
GCCGTAACGGGGTCGATTTGCAGACGGCGATTTACTACACGCTGGCGCGGATGCAGCTCAATGGGCTGGCGGGCTTTACC
GAAGGCTGTGAACTGCTGGCCGGGGTGATAGTCAGTGAGTGGGACGCCCTGTGGCCGCCGCAGCCGGCGGTGCGCACGGA
TTTACTGGAATGGTTCCACACCCGCACCGGCAGCCAGCTGCGCCAGATGGATTTCGGCACCGGCGACCTGCGGATGATTT
ACCGGGCGGAGCGGGCGTTGCAGCTGATTATCGACCGGTTGCAGCAGTCCGACCTGAAACGGCTGCCGCGGGTGGAGAAC
CTGCTGTGGTTCTTCCAGAACGCGGCGAAAAAACTGGAAAAACCGCGGCCGGCCGCGAAACCGGTTCAGTCGCCGGTGCA
GATGCCGCCGCTGGTCTACCTGTCCCAGTCCGACACCGAGCCGGAAATACCTCCGCCGTCCGCACCGCCACGGCCTGACC
GCCCGCCGGAAGCGGACAGCCCGCGGGTGCGGGTGCAGTTTCCTGAGCCGCCGCGGGGTTGGAATGCGTGGCAGGGTTTT
GGCCTCGGCGCAGTACTCGGCCTGCTGGTGCTGGTCGGGGGGTGGCTGTTGTTCTATAAACCGCTGCAACAGCAGCTCAG
CGCTATCACGGCGTCCCCGGCGGGTGCCCGGCTGGCGTGGCTGACCGAGCCCGCCCTGGCGGGCTATCAGGGCCAGCTGG
ACCGGCTGGCGGAAACCCCCCTGCTGGCGACGTGGGACGCGGCCCGCACGCTGACCGGCACGGCAGCGCAGCAGTGGCCG
GATTCGGCTGAGCAAAAGAACGCCACCCATCAGTGGACACAGGCGATGACCGCCCGTATCGACAGTATCCCGCTGAAAGG
CAGCTGGCACACCACCCGCGACCAGCTCCAGCAACTGGCCGACAAAATCCTGTTGCAGGAGCGTACCCGGGGCAGCTTCA
CGCTCTCGTACCTGAAAACCGCGGTCTATGACCTCCAGCGCAGCCACGGCAGCGAGGTGCCGCTGGAAGAACTGCTGCGC
CAGCTCAACGGCCGGGTGGTGAACGGGGAACCCGTGCCGCCGGTGCTGCTGAAAGGCATTGATGACCGCTTTAACGCCCT
GCTCGGCCGCTATGACCGGCTGCGTCAGGCGGCCGAAAATCCGGCTGAAAAACAGGCCGGGAAACAGACCACCCACCATG
AGTCCACCGTCATCCCTGACGGCGGGCATTAA