Detailed information of component protein


Summary

Component ID T6CP003902
Component protein type TssC
T6SS ID (Type) T6SS00381 experimental (Type i1)
Strain Xenorhabdus bovienii SS-2004
Replicon chromosome
Sequence Protein sequence (493 a.a.); Nucleotide sequence (1479 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) XBJ1_RS01155
Coordinate (Strand) 270579..272057 (+)
NCBI ID WP_012986877.1
RefSeq NC_013892
Uniprot ID A0A077QKX9_XENBV, A0A077N0F8_XENBV, A0A077NW75_XENBV, A0A077NBS2_XENBV, A0A077PJJ7_XENBV, A0A0B6X260_XENBV, D3UYN7_XENBS
KEGG ID xbv:XBW1_0236, xbo:XBJ1_0264
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 3.6e-123 66..365
VipB_2 PF18945.2 3.3e-44 379..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-492 MAQHEENSTALASGATTSLLDEIMSQARITPENDGYYIAKQGIAAFISSILDTGANEEPINKLVVDKMIVELDKKLSEQMDEIMHAKPFQELESSWRSLKILVDRTDFRENIKINIIHATKDEMLEDFEFSPEIIQSGFYKHVYSTGYGQFGGEPVAAVIGNYAFTNSSPDIKLMQYVSAVGAMAHSPFLSSVSPEFFGVNSFTDLPAIKDLKSVFEGPSHTKWRALRESEDSRYLGLTAPRFLLRLPYSSVENPIKNFNYQENVSRDHEHFLWGNTAYLMASCLTDSFAKYRWCPNIIGPQSGGTVSDLPVHLYEAMGQVQAKIPTEVLITDRREFELAEEGFITLTMRKGSDNAAFFSANSVQKPKVFPNTREGKIAETNYKLGTQLPYMFIINRLAHYIKVLQREQIGSWKERQDLERELNMWLKQYIADQENPPTDVRSRRPLRAAEIKVLDVEGDPGWYQVAMQVRPHFKYMGASFELSLVGRLDKE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9873 - -


  Protein sequence: 493 a.a.    

>T6CP003902 NC_013892:270579-272057 [Xenorhabdus bovienii SS-2004] [TssC]
MAQHEENSTALASGATTSLLDEIMSQARITPENDGYYIAKQGIAAFISSILDTGANEEPINKLVVDKMIVELDKKLSEQM
DEIMHAKPFQELESSWRSLKILVDRTDFRENIKINIIHATKDEMLEDFEFSPEIIQSGFYKHVYSTGYGQFGGEPVAAVI
GNYAFTNSSPDIKLMQYVSAVGAMAHSPFLSSVSPEFFGVNSFTDLPAIKDLKSVFEGPSHTKWRALRESEDSRYLGLTA
PRFLLRLPYSSVENPIKNFNYQENVSRDHEHFLWGNTAYLMASCLTDSFAKYRWCPNIIGPQSGGTVSDLPVHLYEAMGQ
VQAKIPTEVLITDRREFELAEEGFITLTMRKGSDNAAFFSANSVQKPKVFPNTREGKIAETNYKLGTQLPYMFIINRLAH
YIKVLQREQIGSWKERQDLERELNMWLKQYIADQENPPTDVRSRRPLRAAEIKVLDVEGDPGWYQVAMQVRPHFKYMGAS
FELSLVGRLDKE*

  Nucleotide sequence: 1479 bp    

>T6CP003902 NC_013892:270579-272057 [Xenorhabdus bovienii SS-2004] [TssC]
ATGGCTCAGCACGAAGAAAACAGCACCGCTCTTGCTTCTGGCGCAACGACCTCCCTGCTTGATGAAATTATGTCTCAGGC
AAGAATCACACCAGAAAATGACGGCTACTATATCGCAAAACAAGGTATCGCTGCGTTTATCAGCAGTATTCTGGACACAG
GCGCTAACGAAGAACCGATCAACAAACTCGTCGTTGATAAAATGATCGTTGAGCTTGATAAAAAGCTGAGTGAGCAGATG
GATGAAATCATGCACGCGAAGCCGTTTCAGGAGCTGGAATCCTCATGGCGTTCACTGAAAATTCTGGTGGATCGCACTGA
TTTCCGTGAAAACATCAAAATCAACATCATTCATGCTACTAAAGATGAAATGCTGGAAGACTTTGAGTTTTCGCCTGAAA
TCATTCAGTCTGGTTTCTACAAACACGTCTACTCTACAGGCTACGGTCAGTTCGGTGGTGAACCTGTTGCTGCCGTCATC
GGTAACTATGCATTCACCAATTCCTCACCTGACATCAAACTGATGCAATACGTCAGTGCTGTCGGTGCAATGGCTCACTC
ACCATTCCTTTCTTCCGTTTCACCTGAGTTCTTTGGTGTTAACAGTTTTACCGACCTGCCAGCCATCAAAGATTTGAAGT
CTGTCTTCGAAGGCCCTTCACATACTAAATGGCGTGCACTGCGCGAATCTGAAGATTCTCGCTATCTGGGTCTGACAGCA
CCCCGTTTCCTGTTGCGTCTGCCTTATTCCAGCGTTGAAAATCCAATCAAAAACTTCAACTATCAGGAAAATGTCAGTCG
TGACCACGAGCATTTCCTGTGGGGTAACACGGCTTATCTGATGGCGAGTTGTCTGACGGACAGCTTTGCTAAATATCGCT
GGTGTCCAAACATCATCGGTCCACAGAGCGGCGGTACGGTGAGCGATTTGCCTGTGCATCTGTATGAGGCAATGGGTCAG
GTGCAGGCTAAAATCCCAACTGAGGTTCTGATCACTGACCGTCGTGAATTTGAACTGGCAGAAGAAGGCTTTATTACGCT
GACCATGCGTAAAGGCAGCGATAACGCCGCATTCTTCTCTGCAAACTCAGTTCAGAAGCCAAAAGTTTTCCCGAATACCC
GTGAAGGTAAGATTGCGGAAACCAACTACAAGTTGGGTACGCAGCTTCCATACATGTTCATCATCAACCGTCTGGCTCAC
TACATCAAAGTATTGCAGCGCGAACAGATCGGCTCTTGGAAAGAGCGTCAGGATCTGGAGCGTGAACTGAATATGTGGCT
GAAACAGTACATTGCTGATCAGGAAAACCCGCCAACTGATGTTCGTAGCCGTCGTCCGCTGCGTGCAGCTGAAATCAAGG
TACTGGATGTTGAAGGTGATCCAGGTTGGTATCAGGTGGCTATGCAAGTTCGCCCACACTTTAAATATATGGGTGCAAGT
TTCGAACTGTCACTGGTTGGACGTTTGGATAAGGAATAA