Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01200  |
| T6SS type | Type i2 |
| Strain | Escherichia coli KTE165 |
| Replicon (RefSeq) | chromosome (NZ_KB733141) |
| Location | 180921..202372 |
| Function | - |
| Comment | - |
| References | - |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssD | TssH | TssI | TssK | TssL |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| A31K_RS20900 (csdA) | 176217..177422 | + | 1206 | 481041956 | cysteine desulfurase CsdA | ||
| A31K_RS20895 (csdE) | 177422..177865 | + | 444 | 446106417 | cysteine desulfurase sulfur acceptor subunit CsdE | ||
| A31K_RS20890 (tcdA) | 177916..178722 | - | 807 | 486400236 | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | ||
| A31K_RS20885 (mltA) | 178799..179896 | - | 1098 | 446601304 | murein transglycosylase A | ||
| T6CP015224 | TssB | A31K_RS20870 (tssB) | 180921..181421 | + | 501 | 481041958 | type VI secretion system contractile sheath small subunit |
| T6CP015225 | TssC | A31K_RS20865 (tssC) | 181480..183018 | + | 1539 | 486400237 | type VI secretion system contractile sheath large subunit |
| T6CP015226 | TssK | A31K_RS20860 (tssK) | 183038..184375 | + | 1338 | 486400238 | type VI secretion system baseplate subunit TssK |
| T6CP015227 | TssL | A31K_RS20855 | 184372..185037 | + | 666 | 486400239 | type VI secretion system protein TssL, short form |
| A31K_RS20850 | 185050..186702 | + | 1653 | 486400240 | OmpA family protein | ||
| T6CP015228 | TssD | A31K_RS20845 | 186760..187251 | + | 492 | 446919812 | Hcp family type VI secretion system effector |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
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Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF01521 | A31K_02346 (Hcp-ET2) | Tle | IMU00345 | Escherichia coli KTE165 | chromosome (NZ_KB733141) | 2548806..2550806 (+) | 431425568 |
Showing 1 to 1 of 1 rows
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| IMU00345 | A31K_02347 (Hcp-ET2) | EFF01521 | Escherichia coli KTE165 | chromosome (NZ_KB733141) | 2548806..2550806 (+) | 486402833 |
Showing 1 to 1 of 1 rows
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||