Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01200  |
| T6SS type | Type i2 |
| Strain | Escherichia coli KTE165 |
| Replicon (RefSeq) | chromosome (NZ_KB733141) |
| Location | 180921..202372 |
| Function | - |
| Comment | - |
| References | - |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | TssA | TssB | TssC | TssD | TssH | TssI | TssK | TssL |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| A31K_RS20900 (csdA) | 176217..177422 | + | 1206 | 481041956 | cysteine desulfurase CsdA | ||
| A31K_RS20895 (csdE) | 177422..177865 | + | 444 | 446106417 | cysteine desulfurase sulfur acceptor subunit CsdE | ||
| A31K_RS20890 (tcdA) | 177916..178722 | - | 807 | 486400236 | tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA | ||
| A31K_RS20885 (mltA) | 178799..179896 | - | 1098 | 446601304 | murein transglycosylase A | ||
| T6CP015224 | TssB | A31K_RS20870 (tssB) | 180921..181421 | + | 501 | 481041958 | type VI secretion system contractile sheath small subunit |
| T6CP015225 | TssC | A31K_RS20865 (tssC) | 181480..183018 | + | 1539 | 486400237 | type VI secretion system contractile sheath large subunit |
| T6CP015226 | TssK | A31K_RS20860 (tssK) | 183038..184375 | + | 1338 | 486400238 | type VI secretion system baseplate subunit TssK |
| T6CP015227 | TssL | A31K_RS20855 | 184372..185037 | + | 666 | 486400239 | type VI secretion system protein TssL, short form |
| A31K_RS20850 | 185050..186702 | + | 1653 | 486400240 | OmpA family protein | ||
| T6CP015228 | TssD | A31K_RS20845 | 186760..187251 | + | 492 | 446919812 | Hcp family type VI secretion system effector |
| T6CP015229 | TssH | A31K_RS20840 (tssH) | 187442..190078 | + | 2637 | 486400241 | type VI secretion system ATPase TssH |
| T6CP015230 | TssI | A31K_RS20835 (vgrG) | 190090..192648 | + | 2559 | 486400243 | type VI secretion system tip protein VgrG |
| A31K_RS20830 | 192660..194111 | + | 1452 | 1325892559 | hypothetical protein | ||
| A31K_RS20825 | 194153..195220 | + | 1068 | 486400245 | hypothetical protein | ||
| A31K_RS20820 | 195293..195673 | + | 381 | 486400246 | hypothetical protein | ||
| A31K_RS20815 | 196004..196267 | + | 264 | 486400248 | PAAR domain-containing protein | ||
| A31K_RS20810 | 196273..197412 | + | 1140 | 486400250 | hypothetical protein | ||
| A31K_RS20805 | 197409..200769 | + | 3361 | pseudogene | type VI secretion protein VasK | ||
| T6CP015231 | TssA | A31K_RS20800 (tssA) | 200762..202372 | + | 1611 | 693075544 | type VI secretion system protein TssA |
| A31K_RS20795 | 202372..203628 | + | 1257 | 1733049886 | PAAR domain-containing protein | ||
| A31K_RS0121810 | 203631..204020 | + | 390 | pseudogene | DUF1240 domain-containing protein | ||
| A31K_RS20790 | 204022..205095 | + | 1074 | pseudogene | type VI secretion system protein VasL | ||
| A31K_RS20785 | 205395..206342 | - | 948 | 486161942 | phosphoglycerate dehydrogenase | ||
| A31K_RS20780 | 206414..207010 | - | 597 | 446988970 | SIS domain-containing protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF01521 |
A31K_02346 (Hcp-ET2) | Tle | IMU00345 |
Escherichia coli KTE165 | chromosome (NZ_KB733141) | 2548806..2550806 (+) | 431425568 |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| IMU00345 |
A31K_02347 (Hcp-ET2) | EFF01521 |
Escherichia coli KTE165 | chromosome (NZ_KB733141) | 2548806..2550806 (+) | 486402833 |
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|