Detailed information of component protein


Summary

Component ID T6CP015229
Component protein type TssH
T6SS ID (Type) T6SS01200 experimental (Type i2)
Strain Escherichia coli KTE165
Replicon chromosome
Sequence Protein sequence (879 a.a.); Nucleotide sequence (2637 bp)
Reference
-
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) A31K_RS20840
Coordinate (Strand) 187442..190078 (+)
NCBI ID 486400241
RefSeq NZ_KB733141
Uniprot ID UPI0002A40692
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 9.5e-38 609..774
AAA_lid_9 PF17871.3 5.2e-30 380..471
ClpB_D2-small PF10431.11 7.6e-14 780..855
AAA PF00004.31 1.1e-09 240..352
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-878 MTGNHPAALLRRLNPYCARALDAAASLCQTRAHAEITIEHWLLKLLEQGEGDITVIARRYEWDIDTLWQSLLAHLDTLPRPVRERPQLSEPLAALIRQAWLIASLEGDDPQIRSQHLLMALTEKPMLPACNDLWVLLSLSRVQLERLRPLLDAQSDECPARQPQVTEPLTSAQPEAATTDAPAKTLTGKQDDALLAVLNRFTEDVTEKARSGRIDPVFGRDTEIRQMVDILSRRRKNNPILVGEPGVGKTALVEGLALRITEGNVPDSLKTVHIRTLDLGLLQAGAGVKGEFEQRLKNVIDAVQKSPEPVLLFIDEAHTIIGAGNQAGGADAANLLKPALARGELRTIAATTWSEYKQYFERDAALERRFQMVKVDEPDDDTACLMLRGLKARYAQHHGVHMLDSAIQTAVRLSRRYLTGRQLPDKAVDLLDTAGARVRMSLDTLPEPLTQLHARLAALDIEREAIEQDSVFYPEASPERLAELTDLRDELQAEAGHLEAQYQQEKALAQQIMTLRQEGTDSSELQQQLRTHQGFAPLLALDVDARAVATVVADWTGIPLSSLLRDEQSDLLSMEQSLENRVVGQSPALCAIAQRLRAAKTGLTPENGPQGVFLLTGPSGTGKTETALTLADTLFGGEKSLITINLSEYQEPHTVSQLKGSPPGYVGYGQGGVLTEAVRKRPYSVVLLDEVEKAHRDVMNLFYQVFDRGFMRDGEGRVIDFRNTVILMTANLGSDHIMQLLEEKPDATDADLHELLYPLLRDHFQPALMARFQTVIYRPLGQEAMRTIVEMKLAQVVRRLHQHYGLETEINDSLYDQLTAACLLPDTGARNIDSLLNQQILPVLSQQLLAQQAAHRKPAQLRLGWDEEDGIVLEFDEK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.7402 - -


  Protein sequence: 879 a.a.    

>T6CP015229 NZ_KB733141:187442-190078 [Escherichia coli KTE165] [TssH]
MTGNHPAALLRRLNPYCARALDAAASLCQTRAHAEITIEHWLLKLLEQGEGDITVIARRYEWDIDTLWQSLLAHLDTLPR
PVRERPQLSEPLAALIRQAWLIASLEGDDPQIRSQHLLMALTEKPMLPACNDLWVLLSLSRVQLERLRPLLDAQSDECPA
RQPQVTEPLTSAQPEAATTDAPAKTLTGKQDDALLAVLNRFTEDVTEKARSGRIDPVFGRDTEIRQMVDILSRRRKNNPI
LVGEPGVGKTALVEGLALRITEGNVPDSLKTVHIRTLDLGLLQAGAGVKGEFEQRLKNVIDAVQKSPEPVLLFIDEAHTI
IGAGNQAGGADAANLLKPALARGELRTIAATTWSEYKQYFERDAALERRFQMVKVDEPDDDTACLMLRGLKARYAQHHGV
HMLDSAIQTAVRLSRRYLTGRQLPDKAVDLLDTAGARVRMSLDTLPEPLTQLHARLAALDIEREAIEQDSVFYPEASPER
LAELTDLRDELQAEAGHLEAQYQQEKALAQQIMTLRQEGTDSSELQQQLRTHQGFAPLLALDVDARAVATVVADWTGIPL
SSLLRDEQSDLLSMEQSLENRVVGQSPALCAIAQRLRAAKTGLTPENGPQGVFLLTGPSGTGKTETALTLADTLFGGEKS
LITINLSEYQEPHTVSQLKGSPPGYVGYGQGGVLTEAVRKRPYSVVLLDEVEKAHRDVMNLFYQVFDRGFMRDGEGRVID
FRNTVILMTANLGSDHIMQLLEEKPDATDADLHELLYPLLRDHFQPALMARFQTVIYRPLGQEAMRTIVEMKLAQVVRRL
HQHYGLETEINDSLYDQLTAACLLPDTGARNIDSLLNQQILPVLSQQLLAQQAAHRKPAQLRLGWDEEDGIVLEFDEK*

  Nucleotide sequence: 2637 bp    

>T6CP015229 NZ_KB733141:187442-190078 [Escherichia coli KTE165] [TssH]
ATGACCGGAAATCACCCCGCCGCGCTGCTGCGTCGCCTTAACCCGTACTGTGCACGGGCGCTGGACGCCGCCGCCTCACT
GTGTCAGACCCGCGCCCATGCGGAGATAACCATTGAACACTGGCTGCTGAAACTGCTGGAGCAGGGAGAAGGCGATATCA
CGGTGATTGCCCGCCGCTATGAATGGGATATCGACACGCTCTGGCAGTCTCTGCTGGCACATCTGGACACCTTACCCCGC
CCGGTCCGCGAACGTCCGCAGCTTTCTGAACCGCTGGCAGCGCTTATCCGACAGGCGTGGCTGATAGCGTCACTGGAAGG
CGACGATCCACAAATCCGCAGTCAGCACCTGCTGATGGCGCTGACAGAAAAACCGATGTTGCCCGCCTGTAATGACCTGT
GGGTATTGCTGAGCCTGAGCCGTGTGCAGCTTGAGCGGCTGCGTCCCCTGCTGGATGCGCAGTCGGATGAATGTCCGGCA
CGTCAGCCACAGGTCACCGAACCGCTGACATCCGCGCAACCAGAGGCGGCAACGACGGACGCACCGGCAAAAACGCTGAC
GGGGAAACAGGATGACGCCCTGCTGGCGGTGCTTAACCGCTTTACCGAAGACGTGACGGAAAAAGCCCGCAGCGGGCGAA
TCGACCCGGTATTCGGGCGCGACACCGAAATTCGCCAGATGGTCGATATCCTCTCCCGTCGCCGCAAAAACAACCCGATT
CTGGTGGGAGAACCGGGGGTGGGCAAAACCGCGCTGGTGGAAGGGCTGGCGCTGCGTATCACCGAAGGCAACGTGCCGGA
CAGCCTGAAAACGGTGCATATCCGCACACTGGACCTCGGTCTGTTACAGGCTGGCGCGGGCGTTAAAGGTGAATTTGAAC
AGCGGCTGAAAAATGTCATCGATGCAGTGCAGAAATCACCGGAGCCGGTACTGCTGTTTATTGATGAAGCCCATACCATT
ATCGGTGCGGGTAATCAGGCAGGCGGCGCGGATGCGGCGAACCTGCTGAAACCGGCACTGGCAAGGGGCGAACTGCGCAC
CATCGCGGCGACCACGTGGAGCGAATACAAACAGTATTTTGAGCGCGACGCCGCGCTGGAGCGCCGCTTCCAGATGGTGA
AAGTGGACGAGCCGGATGATGACACCGCCTGCCTGATGCTCAGGGGGCTGAAAGCCCGCTATGCGCAGCACCACGGCGTA
CATATGCTGGACAGCGCCATTCAGACCGCCGTGCGCCTGTCGCGCCGCTATCTGACCGGACGCCAGCTGCCGGACAAGGC
GGTTGATTTGCTGGATACCGCCGGGGCAAGAGTCCGCATGAGCCTTGACACCCTGCCGGAGCCGTTGACGCAGCTTCATG
CGCGACTGGCGGCGCTGGATATCGAGCGGGAGGCGATTGAGCAGGACAGCGTATTTTATCCCGAAGCCAGCCCGGAGCGG
CTGGCGGAACTGACCGATTTGCGTGATGAGCTACAGGCAGAAGCCGGGCATCTGGAAGCGCAGTATCAGCAGGAAAAGGC
ACTGGCGCAGCAGATTATGACGTTGCGTCAGGAAGGAACAGACAGCTCTGAACTGCAACAGCAACTGCGGACGCATCAGG
GCTTTGCACCGCTGCTGGCGCTGGATGTGGACGCCCGCGCCGTCGCCACGGTGGTGGCGGACTGGACCGGCATCCCGCTC
TCTTCCCTGCTCAGGGACGAGCAGAGCGACCTGCTCAGTATGGAACAGAGTCTTGAAAACCGCGTTGTCGGGCAAAGCCC
GGCGCTCTGCGCCATCGCACAGCGGCTGCGGGCGGCTAAAACCGGCCTCACGCCGGAGAACGGCCCACAGGGGGTATTCC
TGCTGACCGGCCCCAGCGGCACCGGCAAAACCGAAACTGCGCTCACACTGGCCGACACCCTGTTTGGTGGTGAAAAATCC
CTTATCACCATTAATCTTTCGGAATACCAGGAACCGCATACCGTTTCCCAGTTGAAAGGCTCGCCTCCAGGCTACGTTGG
TTACGGTCAGGGTGGCGTACTTACCGAAGCCGTTCGCAAACGCCCTTACAGCGTGGTGCTGCTCGACGAAGTGGAAAAGG
CGCATCGCGACGTGATGAACCTGTTCTATCAGGTGTTCGACCGGGGCTTTATGCGCGACGGCGAAGGGCGGGTAATCGAC
TTCCGCAACACCGTCATTCTGATGACCGCCAATCTGGGCAGCGACCACATCATGCAGCTGCTGGAGGAAAAACCGGACGC
CACGGACGCAGACCTGCATGAACTGCTGTATCCCCTTCTGCGAGACCATTTTCAGCCTGCACTGATGGCGCGTTTTCAGA
CGGTGATTTACCGCCCGCTGGGACAGGAAGCGATGCGCACCATTGTGGAAATGAAACTGGCGCAGGTGGTCCGCCGTCTT
CACCAGCACTACGGACTGGAAACGGAAATCAACGACAGCCTGTATGACCAGCTTACCGCCGCCTGCCTGCTGCCGGATAC
CGGGGCGCGCAATATCGACAGCCTCCTGAACCAGCAAATCCTGCCGGTCTTAAGCCAGCAGTTGCTGGCACAGCAGGCCG
CGCACCGTAAACCAGCCCAACTACGGCTTGGCTGGGATGAGGAGGACGGGATTGTACTGGAATTTGATGAGAAATAA