Detailed information of component protein
Summary
| Component ID | T6CP015228 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01200  (Type i2) |
| Strain | Escherichia coli KTE165 |
| Replicon | chromosome |
| Sequence | Protein sequence (164 a.a.); Nucleotide sequence (492 bp) |
| Reference | - |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | A31K_RS20845 |
| Coordinate (Strand) | 186760..187251 (+) |
| NCBI ID | 446919812 |
| RefSeq | NZ_KB733141 |
| Uniprot ID | S1PDE0_ECOLX, A0A0H2VCJ7_ECOL6, E2QQR5_ECOLX, F4T4F7_ECOLX, A0A0H3EKQ8_ECO8N, A0A192CAI3_ECOLX, W8ZM09_ECOLX |
| KEGG ID | ecc:c3391, ecos:EC958_5036, eln:NRG857_13810 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.2e-38 | 6..146 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-163 | MAIPAYLWLKDDGGADIKGSVDVQGREGSIEVVALDHDVYIPTDNNTGKLTGTRTHKPFTFTKEIDASSPYLYKAVTTGQTLKTAEFKFYRINDAGQEVEYFNITLDNVKLVRVAPLMHDIKDPSREKHNHLERIEFRYEKITWTYKDGNIIHSDSWNERPSA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9853 | - | - |
Protein sequence: 164 a.a.
>T6CP015228 NZ_KB733141:186760-187251 [Escherichia coli KTE165] [TssD]
MAIPAYLWLKDDGGADIKGSVDVQGREGSIEVVALDHDVYIPTDNNTGKLTGTRTHKPFTFTKEIDASSPYLYKAVTTGQ
TLKTAEFKFYRINDAGQEVEYFNITLDNVKLVRVAPLMHDIKDPSREKHNHLERIEFRYEKITWTYKDGNIIHSDSWNER
PSA*
MAIPAYLWLKDDGGADIKGSVDVQGREGSIEVVALDHDVYIPTDNNTGKLTGTRTHKPFTFTKEIDASSPYLYKAVTTGQ
TLKTAEFKFYRINDAGQEVEYFNITLDNVKLVRVAPLMHDIKDPSREKHNHLERIEFRYEKITWTYKDGNIIHSDSWNER
PSA*
Nucleotide sequence: 492 bp
>T6CP015228 NZ_KB733141:186760-187251 [Escherichia coli KTE165] [TssD]
ATGGCTATTCCTGCTTATCTCTGGCTGAAAGATGACGGCGGCGCGGATATCAAAGGTTCCGTGGACGTTCAGGGGCGCGA
AGGTAGCATCGAAGTGGTGGCGCTGGATCACGATGTGTACATCCCGACCGACAACAACACCGGCAAACTGACCGGTACCC
GTACTCACAAGCCCTTTACGTTTACCAAAGAAATCGATGCCTCCAGCCCGTATCTCTACAAAGCTGTGACCACCGGCCAG
ACTCTGAAAACGGCAGAATTTAAGTTTTACCGCATCAACGATGCCGGTCAGGAAGTGGAGTACTTCAACATCACGCTGGA
TAACGTCAAGCTGGTCAGAGTCGCTCCGCTTATGCACGACATCAAGGATCCTTCCAGAGAGAAGCATAACCACCTGGAAC
GTATTGAGTTCCGCTACGAGAAAATCACCTGGACTTACAAAGACGGCAACATCATTCATTCCGACTCGTGGAATGAGCGT
CCTTCCGCCTGA
ATGGCTATTCCTGCTTATCTCTGGCTGAAAGATGACGGCGGCGCGGATATCAAAGGTTCCGTGGACGTTCAGGGGCGCGA
AGGTAGCATCGAAGTGGTGGCGCTGGATCACGATGTGTACATCCCGACCGACAACAACACCGGCAAACTGACCGGTACCC
GTACTCACAAGCCCTTTACGTTTACCAAAGAAATCGATGCCTCCAGCCCGTATCTCTACAAAGCTGTGACCACCGGCCAG
ACTCTGAAAACGGCAGAATTTAAGTTTTACCGCATCAACGATGCCGGTCAGGAAGTGGAGTACTTCAACATCACGCTGGA
TAACGTCAAGCTGGTCAGAGTCGCTCCGCTTATGCACGACATCAAGGATCCTTCCAGAGAGAAGCATAACCACCTGGAAC
GTATTGAGTTCCGCTACGAGAAAATCACCTGGACTTACAAAGACGGCAACATCATTCATTCCGACTCGTGGAATGAGCGT
CCTTCCGCCTGA