Detailed information of component protein


Summary

Component ID T6CP015225
Component protein type TssC
T6SS ID (Type) T6SS01200 experimental (Type i2)
Strain Escherichia coli KTE165
Replicon chromosome
Sequence Protein sequence (513 a.a.); Nucleotide sequence (1539 bp)
Reference
-
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) A31K_RS20865
Coordinate (Strand) 181480..183018 (+)
NCBI ID 486400237
RefSeq NZ_KB733141
Uniprot ID UPI0002A211A8
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2.5e-119 89..387
VipB_2 PF18945.2 5.7e-39 397..507
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-512 MSVQQEHATSETATLTTTESGGVYQSLFDKINLTPVSSIQEIDLWQNSETLADASPDERVTAAIHVLLSCLAKSGENVVKLDKSLLDFHIDDLDQKISKQLDAVMHHPEFQKVESLWRGTWFVVQRTDFRKNVRIELLDISKEHLRQDFDDSPEIIQSGLYRHTYIQEYDTPGGEPVASLISSYEFDNSPQDIALLRNISRVSAASHMPFIGSVGPKFFLKNSMEEVAAIKDIGNYFDRAEYIKWKSFRDTDDSRYVGLVMPRVLGRLPYGPDTVPVRSFNYVEEVKGPDHDKYLWTNASFAFAANMVKSFVNNGWCVQIRGPQAGGAVADLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATANSRINARLPYIFLLSRIAHYLKIIQRENIGTTKDRRVLELELNTWIRTLVTEMTDPGDELQASHPLRDGKVIVEDIEDNPGFFRVRLFAVPHFQIEGMDVNLSLVSQMPKAKA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9865 - -


  Protein sequence: 513 a.a.    

>T6CP015225 NZ_KB733141:181480-183018 [Escherichia coli KTE165] [TssC]
MSVQQEHATSETATLTTTESGGVYQSLFDKINLTPVSSIQEIDLWQNSETLADASPDERVTAAIHVLLSCLAKSGENVVK
LDKSLLDFHIDDLDQKISKQLDAVMHHPEFQKVESLWRGTWFVVQRTDFRKNVRIELLDISKEHLRQDFDDSPEIIQSGL
YRHTYIQEYDTPGGEPVASLISSYEFDNSPQDIALLRNISRVSAASHMPFIGSVGPKFFLKNSMEEVAAIKDIGNYFDRA
EYIKWKSFRDTDDSRYVGLVMPRVLGRLPYGPDTVPVRSFNYVEEVKGPDHDKYLWTNASFAFAANMVKSFVNNGWCVQI
RGPQAGGAVADLPIHLYDLGTGNQVKIPSEVMIPETREFEFANLGFIPLSYYKNRDYACFFSANSAQKPALYDTADATAN
SRINARLPYIFLLSRIAHYLKIIQRENIGTTKDRRVLELELNTWIRTLVTEMTDPGDELQASHPLRDGKVIVEDIEDNPG
FFRVRLFAVPHFQIEGMDVNLSLVSQMPKAKA*

  Nucleotide sequence: 1539 bp    

>T6CP015225 NZ_KB733141:181480-183018 [Escherichia coli KTE165] [TssC]
ATGTCTGTACAACAAGAACATGCCACCTCTGAAACTGCAACACTCACCACCACTGAGTCCGGCGGCGTTTATCAGTCCCT
GTTTGATAAAATTAATTTAACCCCGGTGTCTTCCATTCAGGAAATCGATTTATGGCAAAACAGCGAAACACTGGCCGATG
CCTCACCCGATGAGCGCGTGACGGCGGCGATCCACGTTCTGCTTTCCTGTCTGGCGAAGTCAGGCGAGAACGTGGTTAAA
CTCGACAAGAGCCTGCTGGATTTTCATATCGACGATCTGGATCAGAAAATCAGTAAACAGCTTGATGCAGTCATGCACCA
TCCGGAATTCCAGAAAGTCGAGTCGCTCTGGCGCGGCACATGGTTCGTCGTACAGCGCACTGATTTTCGCAAAAATGTCA
GAATTGAACTGCTGGATATCAGTAAAGAACATCTGCGGCAGGACTTTGATGATTCTCCGGAAATCATTCAGAGCGGTTTA
TATCGTCATACATATATTCAGGAGTACGATACGCCGGGTGGCGAACCTGTTGCCTCATTAATTTCCAGCTATGAATTTGA
TAACAGCCCGCAGGATATTGCCCTGCTGCGCAATATTTCCAGAGTCTCTGCTGCTTCACATATGCCTTTTATCGGTTCCG
TCGGGCCGAAATTCTTCCTCAAAAATTCGATGGAAGAAGTTGCTGCGATTAAAGATATCGGTAACTATTTTGACCGCGCG
GAATATATTAAATGGAAGTCGTTCCGCGACACCGATGACAGCCGCTACGTGGGATTAGTGATGCCACGCGTGCTGGGCCG
TCTGCCGTACGGGCCGGACACGGTGCCGGTGCGCAGCTTTAACTATGTGGAAGAAGTCAAAGGCCCGGATCACGACAAGT
ACCTCTGGACAAACGCCTCGTTCGCCTTTGCCGCCAATATGGTGAAGAGCTTTGTGAATAATGGCTGGTGCGTGCAGATC
CGTGGTCCGCAGGCCGGTGGCGCAGTGGCCGATCTGCCGATCCATCTTTACGATCTTGGCACCGGCAATCAGGTCAAAAT
TCCGTCCGAAGTGATGATCCCGGAAACCCGCGAATTTGAATTTGCCAACCTTGGCTTTATTCCGCTCTCTTATTATAAGA
ATCGCGATTACGCCTGCTTCTTCTCGGCGAACTCTGCCCAGAAACCGGCGCTGTATGATACCGCTGACGCCACCGCCAAC
AGCCGTATCAATGCCCGTCTGCCTTACATCTTCCTGCTGTCCCGCATTGCGCATTACCTGAAAATCATTCAGCGCGAGAA
TATCGGCACCACCAAAGACAGGCGCGTGCTGGAACTGGAGCTTAACACCTGGATACGCACGCTGGTGACGGAAATGACCG
ATCCGGGCGATGAACTTCAGGCTTCGCATCCACTGCGCGACGGGAAAGTTATCGTCGAGGACATAGAGGACAATCCGGGC
TTCTTCCGCGTCAGACTCTTTGCCGTGCCGCATTTCCAGATCGAAGGGATGGACGTCAACCTTTCTCTGGTTTCCCAGAT
GCCAAAAGCAAAAGCCTGA