Detailed information of component protein


Summary

Component ID T6CP015231
Component protein type TssA
T6SS ID (Type) T6SS01200 experimental (Type i2)
Strain Escherichia coli KTE165
Replicon chromosome
Sequence Protein sequence (537 a.a.); Nucleotide sequence (1611 bp)
Reference
-
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) A31K_RS20800
Coordinate (Strand) 200762..202372 (+)
NCBI ID 693075544
RefSeq NZ_KB733141
Uniprot ID UPI00050B73B9
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 1.8e-80 226..488
ImpA_N PF06812.14 2.5e-18 34..138
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-536 MSELLQKLTRSCFADRDALDVARTQAALWQTWLLPVTADTPVGEDPGYHDDFLRIRDEMNKLSGADTGLICQLAESLLLTQAKDVRIATYYIWARLHRDGERGLAEGLALLAGLVERFGTQLLPSRPASRKIALEWLAGEKMLDSLARYPEVAKEDFANIVAALNQLSVSFTAWPEDQHSPSLMPLINALESRLAQSGGMNAVVPQNSSGVPAPSSPVDAPQVQTITSGRDLLDQAKVLARYLNEQPQGWLSAHRLMKTLRWDTVHELPPDVDGKTRLAPPRTESRNQLKRLYAQQNWTELLEQADLMFSTGVSHFWLDIQWYLHQALTKAGAPWDRWTAVIRQDLALLLERLPGLENLAWNDGTPFADEVTRNWIAQQVMMREDGAWLAGKAAVPTDDTANDVLALEPEALEMADSQGVEAALGWIQTRPGITTARQRLLLRLLMARVAEHYGKNEMALLLLEELDTAAQGITLTQWEPELLFEVKARQLKLLRLRAHRYADKALLNRKIEILLGTLVAIDPVRAAVLCDSQHKD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9356 - -


  Protein sequence: 537 a.a.    

>T6CP015231 NZ_KB733141:200762-202372 [Escherichia coli KTE165] [TssA]
MSELLQKLTRSCFADRDALDVARTQAALWQTWLLPVTADTPVGEDPGYHDDFLRIRDEMNKLSGADTGLICQLAESLLLT
QAKDVRIATYYIWARLHRDGERGLAEGLALLAGLVERFGTQLLPSRPASRKIALEWLAGEKMLDSLARYPEVAKEDFANI
VAALNQLSVSFTAWPEDQHSPSLMPLINALESRLAQSGGMNAVVPQNSSGVPAPSSPVDAPQVQTITSGRDLLDQAKVLA
RYLNEQPQGWLSAHRLMKTLRWDTVHELPPDVDGKTRLAPPRTESRNQLKRLYAQQNWTELLEQADLMFSTGVSHFWLDI
QWYLHQALTKAGAPWDRWTAVIRQDLALLLERLPGLENLAWNDGTPFADEVTRNWIAQQVMMREDGAWLAGKAAVPTDDT
ANDVLALEPEALEMADSQGVEAALGWIQTRPGITTARQRLLLRLLMARVAEHYGKNEMALLLLEELDTAAQGITLTQWEP
ELLFEVKARQLKLLRLRAHRYADKALLNRKIEILLGTLVAIDPVRAAVLCDSQHKD*

  Nucleotide sequence: 1611 bp    

>T6CP015231 NZ_KB733141:200762-202372 [Escherichia coli KTE165] [TssA]
ATGAGTGAACTGTTGCAAAAGCTGACCCGTAGCTGTTTTGCCGACCGGGATGCACTGGATGTGGCGCGAACACAGGCGGC
GCTGTGGCAGACATGGCTGCTGCCGGTGACGGCAGACACGCCGGTCGGGGAAGACCCCGGCTACCACGACGATTTCCTGC
GTATCCGCGACGAAATGAACAAACTTTCCGGTGCCGATACCGGCCTTATCTGCCAGCTTGCCGAATCCCTGCTGCTGACG
CAGGCCAAAGACGTGCGCATCGCCACTTACTACATCTGGGCGCGACTGCACCGCGACGGTGAGCGCGGACTGGCTGAAGG
ACTGGCGCTGTTAGCCGGGCTGGTGGAACGCTTCGGTACGCAACTGCTGCCCTCGCGCCCGGCAAGCCGAAAAATAGCGC
TGGAGTGGCTGGCGGGGGAAAAGATGCTCGACAGCCTTGCCCGCTACCCGGAGGTGGCAAAAGAGGATTTTGCGAACATT
GTTGCCGCTCTTAATCAACTGTCGGTTTCCTTCACTGCATGGCCCGAAGACCAGCATTCCCCCTCCCTGATGCCGCTGAT
TAACGCGCTGGAATCACGTCTGGCGCAGTCGGGCGGGATGAACGCGGTGGTGCCGCAAAACAGCAGCGGCGTTCCGGCAC
CGTCTTCCCCGGTGGATGCGCCGCAGGTACAGACCATCACCTCCGGGCGCGACCTGCTCGACCAGGCGAAAGTGCTGGCC
CGTTATCTGAACGAACAGCCGCAGGGCTGGCTTTCAGCACACCGGCTGATGAAAACCCTGCGCTGGGACACGGTGCATGA
ACTGCCGCCGGATGTGGACGGCAAAACCCGGCTGGCCCCACCACGCACCGAGTCACGCAATCAGCTTAAGCGGCTGTATG
CCCAGCAGAACTGGACGGAACTGCTGGAGCAGGCCGACCTGATGTTCAGCACCGGTGTCAGCCATTTCTGGCTGGATATC
CAGTGGTATCTGCATCAGGCGCTGACTAAGGCGGGCGCACCGTGGGACAGATGGACAGCGGTTATCCGTCAGGACCTGGC
GCTGCTGCTGGAGCGCCTGCCGGGGCTGGAAAATCTGGCATGGAACGACGGCACGCCGTTCGCCGACGAGGTGACGCGCA
ACTGGATAGCGCAGCAGGTCATGATGCGGGAAGACGGCGCATGGCTTGCGGGGAAAGCCGCTGTGCCGACAGACGACACG
GCAAACGACGTACTGGCGCTGGAGCCGGAAGCACTGGAGATGGCAGACAGTCAGGGCGTGGAAGCGGCGCTGGGCTGGAT
ACAGACCCGTCCGGGCATCACCACGGCACGACAGCGCCTGTTATTGCGACTGCTGATGGCACGGGTGGCGGAACATTACG
GTAAAAACGAGATGGCGCTCCTGCTGCTGGAAGAACTGGATACCGCCGCACAGGGAATAACGCTGACACAGTGGGAGCCA
GAGCTGCTGTTTGAAGTAAAAGCCCGACAACTGAAACTGCTGCGTCTGCGGGCGCACCGCTATGCGGATAAAGCCCTGCT
GAACCGAAAAATAGAAATCCTGCTGGGAACGCTGGTGGCAATCGATCCGGTACGGGCAGCGGTACTGTGTGACTCGCAAC
ATAAGGACTGA