Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00254  |
| T6SS type | Type i4b |
| Strain | Acinetobacter baumannii SDF |
| Replicon (RefSeq) | chromosome (NC_010400) |
| Location | 2061603..2081014 |
| Function | effector translocation |
| Comment | - |
| References | [1] Weber BS et al (2013) Genomic and Functional Analysis of the Type VI Secretion System in Acinetobacter. PLoS One. 8(1):e55142. [PudMed:23365692] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| ABSDF_RS10555 | 2056677..2057855 | - | 1179 | 446736533 | cyanate transporter | ||
| ABSDF_RS10560 | 2057855..2058337 | - | 483 | 446569385 | nucleoside deaminase | ||
| ABSDF_RS10565 | 2058353..2059000 | - | 648 | 1190339449 | ankyrin repeat domain-containing protein | ||
| ABSDF_RS10570 | 2059173..2060024 | + | 852 | 446382331 | LysR family transcriptional regulator | ||
| ABSDF_RS10575 | 2060027..2060980 | - | 954 | 446895327 | M15 family metallopeptidase | ||
| ABSDF_RS10580 | 2060988..2061590 | - | 603 | 445968589 | hypothetical protein | ||
| T6CP002506 | TssL | ABSDF_RS10585 | 2061603..2062409 | - | 807 | 446005770 | type IVB secretion system protein IcmH/DotU |
| T6CP002507 | TssK | ABSDF_RS10590 (tssK) | 2062427..2063791 | - | 1365 | 446393585 | type VI secretion system baseplate subunit TssK |
| T6CP002508 | TssA | ABSDF_RS10595 (tssA) | 2063808..2064902 | - | 1095 | 445942859 | type VI secretion system protein TssA |
| T6CP002509 | TssH | ABSDF_RS10600 (tssH) | 2064926..2067607 | - | 2682 | 1605504011 | type VI secretion system ATPase TssH |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF00316 | ABSDF_RS10645 | - | - | Acinetobacter baumannii SDF | chromosome (NC_010400) | 2078484..2078987 (-) | 169633798 |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||