Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00254  |
| T6SS type | Type i4b |
| Strain | Acinetobacter baumannii SDF |
| Replicon (RefSeq) | chromosome (NC_010400) |
| Location | 2061603..2081014 |
| Function | effector translocation |
| Comment | - |
| References | [1] Weber BS et al (2013) Genomic and Functional Analysis of the Type VI Secretion System in Acinetobacter. PLoS One. 8(1):e55142. [PudMed:23365692] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TagL | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| ABSDF_RS10555 | 2056677..2057855 | - | 1179 | 446736533 | cyanate transporter | ||
| ABSDF_RS10560 | 2057855..2058337 | - | 483 | 446569385 | nucleoside deaminase | ||
| ABSDF_RS10565 | 2058353..2059000 | - | 648 | 1190339449 | ankyrin repeat domain-containing protein | ||
| ABSDF_RS10570 | 2059173..2060024 | + | 852 | 446382331 | LysR family transcriptional regulator | ||
| ABSDF_RS10575 | 2060027..2060980 | - | 954 | 446895327 | M15 family metallopeptidase | ||
| ABSDF_RS10580 | 2060988..2061590 | - | 603 | 445968589 | hypothetical protein | ||
| T6CP002506 | TssL | ABSDF_RS10585 | 2061603..2062409 | - | 807 | 446005770 | type IVB secretion system protein IcmH/DotU |
| T6CP002507 | TssK | ABSDF_RS10590 (tssK) | 2062427..2063791 | - | 1365 | 446393585 | type VI secretion system baseplate subunit TssK |
| T6CP002508 | TssA | ABSDF_RS10595 (tssA) | 2063808..2064902 | - | 1095 | 445942859 | type VI secretion system protein TssA |
| T6CP002509 | TssH | ABSDF_RS10600 (tssH) | 2064926..2067607 | - | 2682 | 1605504011 | type VI secretion system ATPase TssH |
| T6CP011375 | PAAR | ABSDF_RS10605 | 2067827..2068090 | - | 264 | 446090254 | PAAR domain-containing protein |
| T6CP011376 | TagL | ABSDF_RS10610 | 2068107..2068874 | - | 768 | 446995154 | OmpA family protein |
| ABSDF_RS10615 (tagF) | 2068877..2069836 | - | 960 | 446479383 | type VI secretion system-associated protein TagF | ||
| T6CP002510 | TssM | ABSDF_RS10620 (tssM) | 2069874..2073698 | - | 3825 | 446479051 | type VI secretion system membrane subunit TssM |
| ABSDF_RS10625 | 2073729..2075141 | - | 1413 | 446514526 | hypothetical protein | ||
| T6CP002511 | TssG | ABSDF_RS10630 (tssG) | 2075138..2076136 | - | 999 | 447113136 | type VI secretion system baseplate subunit TssG |
| T6CP002512 | TssF | ABSDF_RS10635 (tssF) | 2076100..2077911 | - | 1812 | 446490974 | type VI secretion system baseplate subunit TssF |
| T6CP002513 | TssE | ABSDF_RS10640 (tssE) | 2077928..2078404 | - | 477 | 446969775 | type VI secretion system baseplate subunit TssE |
| T6CP002514 | TssD | ABSDF_RS10645 | 2078484..2078987 | - | 504 | 446575849 | type VI secretion system tube protein Hcp |
| T6CP002515 | TssC | ABSDF_RS10650 (tssC) | 2079037..2080518 | - | 1482 | 446989266 | type VI secretion system contractile sheath large subunit |
| T6CP002516 | TssB | ABSDF_RS10655 (tssB) | 2080511..2081014 | - | 504 | 447041787 | type VI secretion system contractile sheath small subunit |
| ABSDF_RS10660 | 2081031..2081723 | - | 693 | 446792455 | hypothetical protein | ||
| ABSDF_RS10665 | 2082399..2083211 | - | 813 | 446666020 | IS5 family transposase | ||
| ABSDF_RS10670 | 2083266..2083515 | - | 250 | pseudogene | hypothetical protein | ||
| ABSDF_RS10675 | 2083733..2084953 | - | 1221 | 446621277 | chloride channel protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF00316 |
ABSDF_RS10645 | - | - | Acinetobacter baumannii SDF | chromosome (NC_010400) | 2078484..2078987 (-) | 169633798 |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|