Detailed information of component protein


Summary

Component ID T6CP011375
Component protein type PAAR
T6SS ID (Type) T6SS00254 experimental (Type i4b)
Strain Acinetobacter baumannii SDF
Replicon chromosome
Sequence Protein sequence (88 a.a.); Nucleotide sequence (264 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) ABSDF_RS10605
Coordinate (Strand) 2067827..2068090 (-)
NCBI ID 446090254
RefSeq NC_010400
Uniprot ID UPI000165F12B
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PAAR_motif PF05488.15 2.2e-20 9..78
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-87 MASPYIMIGCPTTGGGQVISGNSAFLIEGITIACVGDKATCPAHKTVSTIVSGDPNMQVMGKAAARVNDSLSCGCKLLPKQSLVNQG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8920 - -


  Protein sequence: 88 a.a.    

>T6CP011375 NC_010400:c2068090-2067827 [Acinetobacter baumannii SDF] [PAAR]
MASPYIMIGCPTTGGGQVISGNSAFLIEGITIACVGDKATCPAHKTVSTIVSGDPNMQVMGKAAARVNDSLSCGCKLLPK
QSLVNQG*

  Nucleotide sequence: 264 bp    

>T6CP011375 NC_010400:c2068090-2067827 [Acinetobacter baumannii SDF] [PAAR]
ATGGCTAGCCCTTACATTATGATTGGATGCCCAACGACAGGTGGAGGGCAAGTCATTTCTGGTAATAGTGCATTTTTAAT
TGAGGGAATCACAATTGCATGTGTAGGTGATAAAGCAACTTGTCCGGCGCATAAAACGGTTTCTACGATTGTTTCCGGTG
ACCCAAATATGCAAGTGATGGGAAAAGCAGCAGCAAGAGTAAATGATTCATTATCGTGTGGCTGTAAATTATTACCGAAA
CAAAGTTTGGTTAATCAAGGGTAG