Detailed information of component protein


Summary

Component ID T6CP002513
Component protein type TssE
T6SS ID (Type) T6SS00254 experimental (Type i4b)
Strain Acinetobacter baumannii SDF
Replicon chromosome
Sequence Protein sequence (159 a.a.); Nucleotide sequence (477 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) ABSDF_RS10640
Coordinate (Strand) 2077928..2078404 (-)
NCBI ID 446969775
RefSeq NC_010400
Uniprot ID N9KTR7_ACIBA, A0A0E1PYI2_ACIBA, A0A0J0ZYC3_ACIBA, B0VB02_ACIBY, D0C8P2_ACIB2
KEGG ID aby:ABAYE2412
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 4.7e-17 34..133

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-158 MNLDRLYPYGFRSTLFDRLIPESEDYAKGLSIQQLRESVAKDLEDLLNSRVAKLDHVIDDYPLVKKSILQFGIIDFVGLSTANPLDRDKICQSIEQSIAAHEPRLRQIRVEMLLDGHNMGALCLSIQAYLNIHPLYEPVVFDALLKPTTQQYVISART



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9965 - -



  Protein sequence: 159 a.a.    

>T6CP002513 NC_010400:c2078404-2077928 [Acinetobacter baumannii SDF] [TssE]
MNLDRLYPYGFRSTLFDRLIPESEDYAKGLSIQQLRESVAKDLEDLLNSRVAKLDHVIDDYPLVKKSILQFGIIDFVGLS
TANPLDRDKICQSIEQSIAAHEPRLRQIRVEMLLDGHNMGALCLSIQAYLNIHPLYEPVVFDALLKPTTQQYVISART*

  Nucleotide sequence: 477 bp    

>T6CP002513 NC_010400:c2078404-2077928 [Acinetobacter baumannii SDF] [TssE]
ATGAACTTAGATCGGCTTTATCCATACGGATTTCGTTCAACTTTATTTGATCGCTTAATTCCAGAAAGTGAAGATTATGC
AAAAGGTCTTTCTATTCAGCAATTAAGAGAATCTGTAGCAAAGGATTTAGAAGATTTGCTCAATAGTCGGGTAGCAAAGT
TAGATCATGTGATTGATGACTATCCACTTGTAAAAAAATCGATACTTCAGTTCGGGATTATTGATTTTGTGGGGCTTTCT
ACAGCCAACCCTCTGGATCGGGATAAAATTTGCCAATCCATTGAGCAATCAATAGCAGCTCATGAACCTCGGCTAAGACA
AATACGGGTAGAGATGTTATTAGATGGACATAATATGGGCGCATTATGTTTAAGTATTCAGGCTTATCTAAATATTCACC
CCTTATATGAACCTGTTGTATTTGATGCATTGTTAAAACCAACAACGCAGCAATATGTAATTTCAGCAAGAACTTAA