Detailed information of component protein
Summary
| Component ID | T6CP002513 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00254  (Type i4b) |
| Strain | Acinetobacter baumannii SDF |
| Replicon | chromosome |
| Sequence | Protein sequence (159 a.a.); Nucleotide sequence (477 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | ABSDF_RS10640 |
| Coordinate (Strand) | 2077928..2078404 (-) |
| NCBI ID | 446969775 |
| RefSeq | NC_010400 |
| Uniprot ID | N9KTR7_ACIBA, A0A0E1PYI2_ACIBA, A0A0J0ZYC3_ACIBA, B0VB02_ACIBY, D0C8P2_ACIB2 |
| KEGG ID | aby:ABAYE2412 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 4.7e-17 | 34..133 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-158 | MNLDRLYPYGFRSTLFDRLIPESEDYAKGLSIQQLRESVAKDLEDLLNSRVAKLDHVIDDYPLVKKSILQFGIIDFVGLSTANPLDRDKICQSIEQSIAAHEPRLRQIRVEMLLDGHNMGALCLSIQAYLNIHPLYEPVVFDALLKPTTQQYVISART |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9965 | - | - |
Protein sequence: 159 a.a.
>T6CP002513 NC_010400:c2078404-2077928 [Acinetobacter baumannii SDF] [TssE]
MNLDRLYPYGFRSTLFDRLIPESEDYAKGLSIQQLRESVAKDLEDLLNSRVAKLDHVIDDYPLVKKSILQFGIIDFVGLS
TANPLDRDKICQSIEQSIAAHEPRLRQIRVEMLLDGHNMGALCLSIQAYLNIHPLYEPVVFDALLKPTTQQYVISART*
MNLDRLYPYGFRSTLFDRLIPESEDYAKGLSIQQLRESVAKDLEDLLNSRVAKLDHVIDDYPLVKKSILQFGIIDFVGLS
TANPLDRDKICQSIEQSIAAHEPRLRQIRVEMLLDGHNMGALCLSIQAYLNIHPLYEPVVFDALLKPTTQQYVISART*
Nucleotide sequence: 477 bp
>T6CP002513 NC_010400:c2078404-2077928 [Acinetobacter baumannii SDF] [TssE]
ATGAACTTAGATCGGCTTTATCCATACGGATTTCGTTCAACTTTATTTGATCGCTTAATTCCAGAAAGTGAAGATTATGC
AAAAGGTCTTTCTATTCAGCAATTAAGAGAATCTGTAGCAAAGGATTTAGAAGATTTGCTCAATAGTCGGGTAGCAAAGT
TAGATCATGTGATTGATGACTATCCACTTGTAAAAAAATCGATACTTCAGTTCGGGATTATTGATTTTGTGGGGCTTTCT
ACAGCCAACCCTCTGGATCGGGATAAAATTTGCCAATCCATTGAGCAATCAATAGCAGCTCATGAACCTCGGCTAAGACA
AATACGGGTAGAGATGTTATTAGATGGACATAATATGGGCGCATTATGTTTAAGTATTCAGGCTTATCTAAATATTCACC
CCTTATATGAACCTGTTGTATTTGATGCATTGTTAAAACCAACAACGCAGCAATATGTAATTTCAGCAAGAACTTAA
ATGAACTTAGATCGGCTTTATCCATACGGATTTCGTTCAACTTTATTTGATCGCTTAATTCCAGAAAGTGAAGATTATGC
AAAAGGTCTTTCTATTCAGCAATTAAGAGAATCTGTAGCAAAGGATTTAGAAGATTTGCTCAATAGTCGGGTAGCAAAGT
TAGATCATGTGATTGATGACTATCCACTTGTAAAAAAATCGATACTTCAGTTCGGGATTATTGATTTTGTGGGGCTTTCT
ACAGCCAACCCTCTGGATCGGGATAAAATTTGCCAATCCATTGAGCAATCAATAGCAGCTCATGAACCTCGGCTAAGACA
AATACGGGTAGAGATGTTATTAGATGGACATAATATGGGCGCATTATGTTTAAGTATTCAGGCTTATCTAAATATTCACC
CCTTATATGAACCTGTTGTATTTGATGCATTGTTAAAACCAACAACGCAGCAATATGTAATTTCAGCAAGAACTTAA