Detailed information of component protein
Summary
| Component ID | T6CP011376 |
| Component protein type | TagL |
| T6SS ID (Type) | T6SS00254  (Type i4b) |
| Strain | Acinetobacter baumannii SDF |
| Replicon | chromosome |
| Sequence | Protein sequence (256 a.a.); Nucleotide sequence (768 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | ABSDF_RS10610 |
| Coordinate (Strand) | 2068107..2068874 (-) |
| NCBI ID | 446995154 |
| RefSeq | NC_010400 |
| Uniprot ID | A0A0E1PYH7_ACIBA, A0A0J0ZX65_ACIBA, A0A2S4T3D5_9GAMM, B0VB19_ACIBY |
| KEGG ID | aby:ABAYE2406 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| OmpA | PF00691.22 | 2.7e-23 | 154..248 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-255 | MNQKYQIKLSQLIKGCFIYAIANYALAQPIVVEGVVPNEASKQAILMKMQSVYGADQVVDKIQVRPVAAPNGWSDSVTRVITPDLKKVSQGKLSVNGTRFELTGKMLNPTEIQPTIQSFQSLVQPPYQLFSQLSVNQAEQKIIDDALKNRIIEFESGSAVLTEAGQKILDEMAVALNKVGGKKVKIVGHTDSSGDATKNLKLSQDRALAVKNYLISKNIPADHLSTEGLGSSKPVADNTSAEGRKKNRRIEFTVL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| SP(Sec/SPI) | 0.7766 | pos: 27-28. ALA-QP. | MNQKYQIKLSQLIKGCFIYAIANYALA |
Protein sequence: 256 a.a.
>T6CP011376 NC_010400:c2068874-2068107 [Acinetobacter baumannii SDF] [TagL]
MNQKYQIKLSQLIKGCFIYAIANYALAQPIVVEGVVPNEASKQAILMKMQSVYGADQVVDKIQVRPVAAPNGWSDSVTRV
ITPDLKKVSQGKLSVNGTRFELTGKMLNPTEIQPTIQSFQSLVQPPYQLFSQLSVNQAEQKIIDDALKNRIIEFESGSAV
LTEAGQKILDEMAVALNKVGGKKVKIVGHTDSSGDATKNLKLSQDRALAVKNYLISKNIPADHLSTEGLGSSKPVADNTS
AEGRKKNRRIEFTVL*
MNQKYQIKLSQLIKGCFIYAIANYALAQPIVVEGVVPNEASKQAILMKMQSVYGADQVVDKIQVRPVAAPNGWSDSVTRV
ITPDLKKVSQGKLSVNGTRFELTGKMLNPTEIQPTIQSFQSLVQPPYQLFSQLSVNQAEQKIIDDALKNRIIEFESGSAV
LTEAGQKILDEMAVALNKVGGKKVKIVGHTDSSGDATKNLKLSQDRALAVKNYLISKNIPADHLSTEGLGSSKPVADNTS
AEGRKKNRRIEFTVL*
Nucleotide sequence: 768 bp
>T6CP011376 NC_010400:c2068874-2068107 [Acinetobacter baumannii SDF] [TagL]
ATGAATCAAAAATATCAAATTAAACTTTCACAACTTATAAAAGGCTGTTTTATATATGCAATTGCGAATTATGCTTTAGC
ACAGCCTATAGTTGTAGAAGGTGTAGTGCCAAATGAAGCAAGTAAACAGGCTATTTTAATGAAAATGCAGTCTGTTTATG
GTGCAGATCAGGTTGTCGATAAAATACAAGTTCGACCAGTTGCCGCTCCAAATGGATGGAGTGACTCTGTCACACGAGTG
ATTACACCTGATCTTAAAAAAGTTTCTCAGGGTAAGTTAAGTGTTAATGGAACCCGATTTGAACTGACCGGGAAAATGCT
AAATCCGACAGAAATACAGCCAACCATTCAGTCTTTTCAGAGTTTGGTACAGCCTCCATATCAATTATTTTCCCAGCTTT
CTGTAAATCAGGCTGAGCAGAAGATTATTGATGATGCTTTAAAAAATCGAATTATTGAATTTGAATCTGGTAGTGCAGTA
TTAACTGAAGCTGGGCAAAAAATTCTTGATGAAATGGCTGTTGCTTTAAATAAAGTGGGCGGGAAAAAAGTCAAAATTGT
GGGGCATACCGATAGTTCTGGTGATGCGACCAAAAACTTAAAACTCAGCCAAGATCGAGCTTTAGCAGTTAAAAATTATT
TAATTAGTAAGAATATTCCTGCTGATCATTTATCTACCGAAGGTTTAGGTTCATCTAAGCCTGTAGCGGACAACACTTCT
GCGGAAGGTAGAAAGAAAAACCGCCGAATTGAGTTCACCGTTTTATAG
ATGAATCAAAAATATCAAATTAAACTTTCACAACTTATAAAAGGCTGTTTTATATATGCAATTGCGAATTATGCTTTAGC
ACAGCCTATAGTTGTAGAAGGTGTAGTGCCAAATGAAGCAAGTAAACAGGCTATTTTAATGAAAATGCAGTCTGTTTATG
GTGCAGATCAGGTTGTCGATAAAATACAAGTTCGACCAGTTGCCGCTCCAAATGGATGGAGTGACTCTGTCACACGAGTG
ATTACACCTGATCTTAAAAAAGTTTCTCAGGGTAAGTTAAGTGTTAATGGAACCCGATTTGAACTGACCGGGAAAATGCT
AAATCCGACAGAAATACAGCCAACCATTCAGTCTTTTCAGAGTTTGGTACAGCCTCCATATCAATTATTTTCCCAGCTTT
CTGTAAATCAGGCTGAGCAGAAGATTATTGATGATGCTTTAAAAAATCGAATTATTGAATTTGAATCTGGTAGTGCAGTA
TTAACTGAAGCTGGGCAAAAAATTCTTGATGAAATGGCTGTTGCTTTAAATAAAGTGGGCGGGAAAAAAGTCAAAATTGT
GGGGCATACCGATAGTTCTGGTGATGCGACCAAAAACTTAAAACTCAGCCAAGATCGAGCTTTAGCAGTTAAAAATTATT
TAATTAGTAAGAATATTCCTGCTGATCATTTATCTACCGAAGGTTTAGGTTCATCTAAGCCTGTAGCGGACAACACTTCT
GCGGAAGGTAGAAAGAAAAACCGCCGAATTGAGTTCACCGTTTTATAG