Detailed information of component protein
Summary
| Component ID | T6CP002511 |
| Component protein type | TssG |
| T6SS ID (Type) | T6SS00254  (Type i4b) |
| Strain | Acinetobacter baumannii SDF |
| Replicon | chromosome |
| Sequence | Protein sequence (333 a.a.); Nucleotide sequence (999 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | ABSDF_RS10630 |
| Coordinate (Strand) | 2075138..2076136 (-) |
| NCBI ID | 447113136 |
| RefSeq | NC_010400 |
| Uniprot ID | UPI000165F12F |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_TssG | PF06996.13 | 7.7e-65 | 20..311 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-332 | MQSERWWQDSSVTAELFQRPKSFEFIQATRLLRHMPANDAALSWCDHFKFETSFNLNFPATEIESLELVDERVHLTNLIVGLTGIQGTLPYTYTNKIKQAPRQQRAETKEFLSLFNHKLTSQYVESSITYHLPVRYEIENKNDYLDILHALNGYVRSQHQQQDLDEYFAEFSGLMQGQNNTVHALKTMLSCIFKHEITIKEFVQESFKLAGDQLTTLGGSQPSLLGINTFCGETIQQIDGKIEIQIGPLKHQQYLRFLPHQELSLKLKKIVETWCSPTLSIDLRLILDESEIQPVRLTQGQEGGLGQGAFLMSRKPNTHNDETCYSLIGEQI |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9927 | - | - |
Protein sequence: 333 a.a.
>T6CP002511 NC_010400:c2076136-2075138 [Acinetobacter baumannii SDF] [TssG]
MQSERWWQDSSVTAELFQRPKSFEFIQATRLLRHMPANDAALSWCDHFKFETSFNLNFPATEIESLELVDERVHLTNLIV
GLTGIQGTLPYTYTNKIKQAPRQQRAETKEFLSLFNHKLTSQYVESSITYHLPVRYEIENKNDYLDILHALNGYVRSQHQ
QQDLDEYFAEFSGLMQGQNNTVHALKTMLSCIFKHEITIKEFVQESFKLAGDQLTTLGGSQPSLLGINTFCGETIQQIDG
KIEIQIGPLKHQQYLRFLPHQELSLKLKKIVETWCSPTLSIDLRLILDESEIQPVRLTQGQEGGLGQGAFLMSRKPNTHN
DETCYSLIGEQI*
MQSERWWQDSSVTAELFQRPKSFEFIQATRLLRHMPANDAALSWCDHFKFETSFNLNFPATEIESLELVDERVHLTNLIV
GLTGIQGTLPYTYTNKIKQAPRQQRAETKEFLSLFNHKLTSQYVESSITYHLPVRYEIENKNDYLDILHALNGYVRSQHQ
QQDLDEYFAEFSGLMQGQNNTVHALKTMLSCIFKHEITIKEFVQESFKLAGDQLTTLGGSQPSLLGINTFCGETIQQIDG
KIEIQIGPLKHQQYLRFLPHQELSLKLKKIVETWCSPTLSIDLRLILDESEIQPVRLTQGQEGGLGQGAFLMSRKPNTHN
DETCYSLIGEQI*
Nucleotide sequence: 999 bp
>T6CP002511 NC_010400:c2076136-2075138 [Acinetobacter baumannii SDF] [TssG]
ATGCAGTCAGAACGTTGGTGGCAAGACTCTTCTGTAACGGCTGAGTTGTTTCAACGCCCTAAGTCTTTTGAGTTTATTCA
AGCAACACGTTTATTGCGTCATATGCCTGCCAATGACGCAGCTTTGTCATGGTGTGACCATTTTAAATTTGAGACCTCAT
TTAACTTAAATTTTCCGGCCACTGAAATTGAAAGTTTAGAGTTAGTAGATGAGCGTGTTCATTTAACAAACCTGATCGTT
GGTCTTACCGGTATACAAGGTACATTACCTTATACATATACAAATAAAATTAAGCAGGCTCCAAGGCAACAACGTGCTGA
AACGAAAGAGTTTTTAAGCTTATTTAATCATAAGCTGACCAGTCAGTATGTAGAGTCAAGTATTACTTATCACTTGCCTG
TGCGCTATGAAATTGAAAATAAAAATGATTATTTGGATATTCTTCATGCATTGAATGGCTATGTTCGCTCACAACATCAG
CAACAAGACTTGGATGAATATTTCGCTGAATTTTCAGGCCTAATGCAGGGGCAAAATAATACGGTTCATGCTTTAAAGAC
GATGTTGAGTTGTATTTTTAAGCATGAAATTACAATTAAAGAGTTTGTACAGGAATCGTTTAAGTTAGCGGGTGATCAGC
TAACCACTTTAGGTGGAAGTCAACCGAGCTTACTTGGTATTAACACATTTTGTGGGGAAACGATTCAACAAATTGATGGA
AAAATTGAGATTCAAATAGGTCCGCTTAAGCATCAGCAATATTTAAGATTTTTACCTCATCAAGAGCTTAGCTTAAAGCT
CAAAAAAATCGTAGAAACCTGGTGCAGTCCAACTTTATCGATAGATTTAAGATTGATATTGGATGAGTCTGAAATACAAC
CTGTTCGCTTAACTCAAGGCCAAGAAGGTGGCCTAGGACAAGGCGCTTTTTTAATGTCTCGTAAGCCTAATACACATAAC
GATGAAACATGTTATAGCCTTATAGGAGAGCAAATATGA
ATGCAGTCAGAACGTTGGTGGCAAGACTCTTCTGTAACGGCTGAGTTGTTTCAACGCCCTAAGTCTTTTGAGTTTATTCA
AGCAACACGTTTATTGCGTCATATGCCTGCCAATGACGCAGCTTTGTCATGGTGTGACCATTTTAAATTTGAGACCTCAT
TTAACTTAAATTTTCCGGCCACTGAAATTGAAAGTTTAGAGTTAGTAGATGAGCGTGTTCATTTAACAAACCTGATCGTT
GGTCTTACCGGTATACAAGGTACATTACCTTATACATATACAAATAAAATTAAGCAGGCTCCAAGGCAACAACGTGCTGA
AACGAAAGAGTTTTTAAGCTTATTTAATCATAAGCTGACCAGTCAGTATGTAGAGTCAAGTATTACTTATCACTTGCCTG
TGCGCTATGAAATTGAAAATAAAAATGATTATTTGGATATTCTTCATGCATTGAATGGCTATGTTCGCTCACAACATCAG
CAACAAGACTTGGATGAATATTTCGCTGAATTTTCAGGCCTAATGCAGGGGCAAAATAATACGGTTCATGCTTTAAAGAC
GATGTTGAGTTGTATTTTTAAGCATGAAATTACAATTAAAGAGTTTGTACAGGAATCGTTTAAGTTAGCGGGTGATCAGC
TAACCACTTTAGGTGGAAGTCAACCGAGCTTACTTGGTATTAACACATTTTGTGGGGAAACGATTCAACAAATTGATGGA
AAAATTGAGATTCAAATAGGTCCGCTTAAGCATCAGCAATATTTAAGATTTTTACCTCATCAAGAGCTTAGCTTAAAGCT
CAAAAAAATCGTAGAAACCTGGTGCAGTCCAACTTTATCGATAGATTTAAGATTGATATTGGATGAGTCTGAAATACAAC
CTGTTCGCTTAACTCAAGGCCAAGAAGGTGGCCTAGGACAAGGCGCTTTTTTAATGTCTCGTAAGCCTAATACACATAAC
GATGAAACATGTTATAGCCTTATAGGAGAGCAAATATGA