Detailed information of component protein


Summary

Component ID T6CP002516
Component protein type TssB
T6SS ID (Type) T6SS00254 experimental (Type i4b)
Strain Acinetobacter baumannii SDF
Replicon chromosome
Sequence Protein sequence (168 a.a.); Nucleotide sequence (504 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) ABSDF_RS10655
Coordinate (Strand) 2080511..2081014 (-)
NCBI ID WP_001119043.1
RefSeq NC_010400
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 6.6e-60 12..164

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-167 MAKRESVQKKLQRIRPPRVQLTYDVEIGDAKEAKELPFVVGVMGDFSAASELERTKLKDKKFINVDLDNIDEVMESLSPRAAFQVDNTLTGEGGKMAVDLTFKSMEDFRPENVVQQVDPLKKLVEARERLTDLRNKISNSERLEDLLDEVLKNTDQIRKLSAEADHE



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9973 - -



  Protein sequence: 168 a.a.    

>T6CP002516 NC_010400:c2081014-2080511 [Acinetobacter baumannii SDF] [TssB]
MAKRESVQKKLQRIRPPRVQLTYDVEIGDAKEAKELPFVVGVMGDFSAASELERTKLKDKKFINVDLDNIDEVMESLSPR
AAFQVDNTLTGEGGKMAVDLTFKSMEDFRPENVVQQVDPLKKLVEARERLTDLRNKISNSERLEDLLDEVLKNTDQIRKL
SAEADHE*

  Nucleotide sequence: 504 bp    

>T6CP002516 NC_010400:c2081014-2080511 [Acinetobacter baumannii SDF] [TssB]
ATGGCTAAGAGAGAAAGCGTACAAAAGAAGCTTCAGCGAATTCGACCTCCACGTGTTCAGCTTACATATGATGTCGAAAT
TGGTGATGCGAAAGAAGCGAAAGAACTACCATTCGTTGTAGGTGTAATGGGTGATTTTTCAGCTGCATCTGAGCTTGAGC
GTACAAAATTAAAAGATAAAAAATTCATTAATGTCGATTTAGATAATATTGATGAAGTAATGGAATCTCTGTCTCCAAGA
GCTGCTTTTCAAGTAGACAATACGTTGACAGGAGAAGGCGGTAAAATGGCAGTTGATTTAACGTTTAAGTCAATGGAAGA
TTTTCGCCCGGAAAATGTTGTACAGCAAGTTGATCCATTAAAGAAATTGGTTGAGGCGCGTGAGCGTTTAACCGATTTAA
GAAACAAAATTTCAAACAGTGAGCGTTTAGAAGATCTGCTTGATGAGGTTCTTAAAAATACTGATCAAATCCGTAAATTA
AGTGCGGAGGCCGATCATGAATAA