Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01242  |
| T6SS type | Type i5 |
| Strain | Agrobacterium tumefaciens strain 1D1108 |
| Replicon (RefSeq) | chromosome (NZ_CP032922) |
| Location | 2042910..2067248 |
| Function | anti-bacterial |
| Comment | T6SS exhibits antibacterial and secrete hcp activity |
| References | [1] Wu CF, Santos MNM, Cho ST, Chang HH, Tsai YM, Smith DA, Kuo CH, Chang JH, Lai EM. et al (2019) Plant-Pathogenic Agrobacterium tumefaciens Strains Have Diverse Type VI Effector-Immunity Pairs and Vary in In-Planta Competitiveness.. Mol Plant Microbe Interact. 32(8):961-971. [PudMed:30830835] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | Tae4 | TagF | TssA | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 2 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| EFF01857 |
At1D1108_RS23245 (Tae4) | Tae | - | Agrobacterium tumefaciens strain 1D1108 | chromosome (NZ_CP032922) | 2064623..2065123 (+) | 503526812 |
| EFF01856 |
At1D1108_RS23235 (hcp) | - | - | Agrobacterium tumefaciens strain 1D1108 | chromosome (NZ_CP032922) | 2063637..2064113 (+) | 490566468 |
| EFF01858 |
At1D1108_RS23280 (E11) | - | IMU00380 |
Agrobacterium tumefaciens strain 1D1108 | chromosome (NZ_CP032922) | 2072000..2073136 (+) | 1421606991 |
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| IMU00380 |
At1D1108_RS23285 (I11_1) | EFF01858 |
Agrobacterium tumefaciens strain 1D1108 | chromosome (NZ_CP032922) | 2073146..2074138 (+) | 490566480 |
Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|