Detailed information of T6SS

Note: only experimentally validated proteins are displayed in the graph.


Summary

T6SS ID T6SS01242 experimental
T6SS type Type i5
Strain Agrobacterium fabrum strain 1D1108
Replicon (RefSeq) chromosome (NZ_CP032922)
Location 2042910..2067248
Function anti-bacterial
Comment T6SS exhibits antibacterial and secrete hcp activity
References
[1] Wu CF, Santos MNM, Cho ST, Chang HH, Tsai YM, Smith DA, Kuo CH, Chang JH, Lai EM. et al (2019) Plant-Pathogenic Agrobacterium tumefaciens Strains Have Diverse Type VI Effector-Immunity Pairs and Vary in In-Planta Competitiveness.. Mol Plant Microbe Interact. 32(8):961-971. [PudMed:30830835]
experimental Experimental investigation has been performed.

T6SS components and genome coordinates

ComponentTae4TagFTssATssBTssCTssDTssETssFTssGTssHTssITssKTssLTssM
Number11112111111111


Component ID Component Locus tag (Gene) Coordinate Strand Size (bp) NCBI ID Product
flank Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files

    

Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Regulator ID Locus tag (Gene) Regulator type Regulatory pathway Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Target (Regulation)

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Effector ID Locus tag (Gene) Classification Cognate immunity protein Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID
EFF01857 experimental At1D1108_RS23245 (Tae4) Tae - Agrobacterium tumefaciens strain 1D1108 chromosome (NZ_CP032922) 2064623..2065123 (+) 503526812
EFF01856 experimental At1D1108_RS23235 (hcp) - - Agrobacterium tumefaciens strain 1D1108 chromosome (NZ_CP032922) 2063637..2064113 (+) 490566468
EFF01858 experimental At1D1108_RS23280 (E11) - IMU00380 experimental Agrobacterium tumefaciens strain 1D1108 chromosome (NZ_CP032922) 2072000..2073136 (+) 1421606991

experimental Experimental investigation has been performed.
insolico Bioinformatics investigation has been performed.
Immunity protein ID Locus tag (Gene) Cognate effector Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID
IMU00380 experimental At1D1108_RS23285 (I11_1) EFF01858 experimental Agrobacterium tumefaciens strain 1D1108 chromosome (NZ_CP032922) 2073146..2074138 (+) 490566480

experimental Experimental investigation has been performed.
Accessory protein ID Locus tag (Gene) Type             Organism                 Replicon (Accession) Coordinates (Strand) NCBI ID Related structure protein Related effector