Detailed information of effector
|Cognate immunity protein||-|
|Related T6SS (Type)||T6SS01242 (Type i5)|
|Strain||Agrobacterium tumefaciens strain 1D1108|
|Sequence||Protein sequence (167 a.a.); Nucleotide sequence (501 bp)|
|Description||Hcp and Tae were detected in the media fraction of each strain while Hcp was not detected in the media fractions of any of the ΔtssL mutants but could be detected in the media fractions of mutant strains complemented with their cognate tssL gene|
Bioinformatics investigation has been performed
External database links
|Locus tag (Gene)||At1D1108_RS23245 (Tae4)|
|Coordinates (Strand)||2064623..2065123 (+)|
|Uniprot ID||A0A1S7NCB8_9RHIZ, A0A1S7T3J8_RHIRD, F0LDA2_AGRSH|
Pfam domain hit(s)
|Domain||Pfam ID||E-value||Aligned region|
- Transmembrane helices are predicted using TMHMM 2.0 software.
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
|Prediction||Probability||Cleavage site||Signal peptide sequence|
Protein sequence: 167 a.a. .
Nucleotide sequence: 501 bp .