Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS01275  |
| T6SS type | Type i4b |
| Strain | Acinetobacter baumannii DSM 30011 |
| Replicon (RefSeq) | chromosome (NZ_JJOC02000004) |
| Location | 536657..556068 |
| Function | anti-bacterial; anti-eukaryotic |
| Comment | The A. baumannii DSM30011 T6SS is required for virulence and out-competing E. coli in vivo. |
| References | [1] Repizo GD et al (2015) Differential Role of the T6SS in Acinetobacter baumannii Virulence. PLoS One. 10(9):e0138265. [PudMed:26401654] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | TagF | TssA | TssB | TssC | TssD | TssE | TssF | TssH | TssK | TssL | TssM |
| Number | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 | 1 |
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Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| DSM30011_RS11500 | 531731..532909 | - | 1179 | 1129439365 | cyanate transporter | ||
| DSM30011_RS11505 | 532909..533391 | - | 483 | 1129439366 | nucleoside deaminase | ||
| DSM30011_RS11510 | 533407..534075 | - | 669 | 447154950 | ankyrin repeat domain-containing protein | ||
| DSM30011_RS11515 | 534227..535078 | + | 852 | 446382329 | LysR family transcriptional regulator | ||
| DSM30011_RS11520 | 535081..536034 | - | 954 | 1129439367 | M15 family metallopeptidase | ||
| DSM30011_RS11525 | 536042..536644 | - | 603 | 1129439368 | hypothetical protein | ||
| T6CP015846 | TssL | DSM30011_RS11530 (icmH) | 536657..537463 | - | 807 | 446005774 | type IVB secretion system protein IcmH/DotU |
| T6CP015847 | TssK | DSM30011_RS11535 (tssK) | 537481..538845 | - | 1365 | 446393589 | type VI secretion system baseplate subunit TssK |
| T6CP015848 | TssA | DSM30011_RS11540 (tssA) | 538862..539956 | - | 1095 | 445942860 | type VI secretion system protein TssA |
| T6CP015849 | TssH | DSM30011_RS11545 (tssH) | 539980..542661 | - | 2682 | 1332932850 | type VI secretion system ATPase TssH |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.
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Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|---|
| No matching records found | |||||||
Experimental investigation has been performed. Bioinformatics investigation has been performed.
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Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
|---|---|---|---|---|---|---|
| No matching records found | ||||||
Experimental investigation has been performed.
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Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
|---|---|---|---|---|---|---|---|---|
| No matching records found | ||||||||