Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00908  |
| T6SS type | Type iii |
| Strain | Bacteroides fragilis YCH46 |
| Replicon (RefSeq) | chromosome (NC_006347) |
| Location | 2277219..2299620 |
| Function | anti-bacterial |
| Comment | - |
| References | [1] Ross BD, Verster AJ, Radey MC, Schmidtke DT, Pope CE, Hoffman LR, Hajjar AM, Peterson SB, Borenstein E, Mougous JD. et al (2019) Human gut bacteria contain acquired interbacterial defence systems.. Nature. 575(7781):224-228. [PudMed:31666699] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | PAAR | TssB | TssC | TssD | TssE | TssF | TssG | TssH | TssI | TssK | TssN | TssO | TssP |
| Number | 1 | 1 | 1 | 5 | 1 | 1 | 1 | 1 | 1 | 1 | 1 | 2 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| BF_RS09105 | 2274436..2274804 | - | 369 | WP_010992790.1 | hypothetical protein | ||
| BF_RS09110 | 2274845..2277217 | - | 2373 | WP_010992791.1 | type VI secretion system protein TssR | ||
| T6CP011059 | TssP | BF_RS09115 | 2277219..2278112 | - | 894 | WP_011202651.1 | PKD domain-containing protein |
| T6CP011060 | TssO | BF_RS09120 | 2278109..2278636 | - | 528 | WP_008768464.1 | type VI secretion system transmembrane protein TssO |
| T6CP011061 | TssO | BF_RS09125 | 2278649..2279152 | - | 504 | WP_011202652.1 | hypothetical protein |
| T6CP011062 | TssG | BF_RS09130 | 2279158..2280114 | - | 957 | WP_005787052.1 | type VI secretion system baseplate subunit TssG |
| T6CP011063 | TssK | BF_RS09135 | 2280116..2281258 | - | 1143 | WP_011202653.1 | hypothetical protein |
| T6CP011064 | TssN | BF_RS09140 | 2281286..2282134 | - | 849 | WP_011202654.1 | TssN family type VI secretion system protein |
| BF_RS09145 | 2282194..2283210 | - | 1017 | WP_014298724.1 | hypothetical protein | ||
| BF_RS09150 | 2283210..2286179 | - | 2970 | WP_011202656.1 | hypothetical protein | ||
| T6CP012402 | PAAR | BF_RS09155 | 2286190..2286876 | - | 687 | WP_008768470.1 | PAAR domain-containing protein |
| T6CP011065 | TssI | BF_RS09160 | 2286895..2288745 | - | 1851 | WP_011202657.1 | hypothetical protein |
| T6CP011066 | TssF | BF_RS09165 | 2288771..2290588 | - | 1818 | WP_005787081.1 | type VI secretion system baseplate subunit TssF |
| T6CP011067 | TssE | BF_RS09170 | 2290619..2291059 | - | 441 | WP_011202658.1 | GPW/gp25 family protein |
| BF_RS09175 | 2291056..2291514 | - | 459 | WP_005787085.1 | DUF5456 family protein | ||
| T6CP011068 | TssD | BF_RS09180 | 2291519..2291938 | - | 420 | WP_009292156.1 | hypothetical protein |
| T6CP011069 | TssD | BF_RS09185 | 2291941..2292348 | - | 408 | WP_008659770.1 | hypothetical protein |
| BF_RS09190 | 2292541..2292942 | - | 402 | WP_005794661.1 | hypothetical protein | ||
| BF_RS09195 | 2292939..2293934 | - | 996 | WP_011202659.1 | hypothetical protein | ||
| T6CP011070 | TssD | BF_RS09200 | 2293947..2294351 | - | 405 | WP_011202660.1 | hypothetical protein |
| T6CP011071 | TssD | BF_RS09205 | 2294357..2294785 | - | 429 | WP_011202661.1 | hypothetical protein |
| T6CP011072 | TssH | BF_RS09210 | 2294801..2297284 | - | 2484 | WP_011202662.1 | ATP-dependent Clp protease ATP-binding subunit |
| T6CP011073 | TssC | BF_RS09215 | 2297297..2298676 | - | 1380 | WP_005787102.1 | DUF5458 family protein |
| T6CP011074 | TssB | BF_RS09220 | 2298692..2299141 | - | 450 | WP_011202663.1 | hypothetical protein |
| T6CP011075 | TssD | BF_RS09225 | 2299231..2299620 | - | 390 | WP_005787106.1 | hypothetical protein |
| BF_RS09230 | 2300061..2300801 | - | 741 | WP_010992806.1 | TetR/AcrR family transcriptional regulator | ||
| BF_RS09235 | 2301149..2302420 | + | 1272 | WP_005787114.1 | pyridoxal phosphate-dependent aminotransferase family protein |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
|---|
Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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