Detailed information of component protein


Summary

Component ID T6CP011072
Component protein type TssH
T6SS ID (Type) T6SS00908 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (828 a.a.); Nucleotide sequence (2484 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS09210
Coordinate (Strand) 2294801..2297284 (-)
NCBI ID WP_011202662.1
RefSeq NC_006347
Uniprot ID Q64UX7_BACFR
KEGG ID bfr:BF1954
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 6.2e-42 566..728
AAA_lid_9 PF17871.3 1e-21 351..441
ClpB_D2-small PF10431.11 2.8e-16 735..814
AAA PF00004.31 5.7e-10 212..342
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-827 MDFLNINETVQSVIRISKGVAREYGNASYAPAHLLFALMHKEVGLRSFVESLGKDADYLREWAEVRIEEYPKAAGAGEIMPDPKVNELFEQADNVRIKWGLLEINPLCLLAAIATPEAGFSTDELRSFPIREREIHDLFTSGMGNMKKSVSTQTDLPGSEAPLWTAGAGNLDKYCTDKTALAADKKVYPIVCRDRETRMMMEILGRMGKPNVLIIGDAGVGKTALVDGLACSIIEGTVPQYLKDMTIYELDTGTLIAGATYKGEIEERLKGIIKELSAHGNAILFIDEIHTLIDPKSGNSGAASILKPELAKGNITVIGVTTVDEYRKLIEPDHALNRRFEVLQVSEPDLASTVNMIQAALERYESYHGVGVDVDSLPECVALAKRYVKERRLPDAAIDLIDRTLSAVKMINQSGEKDIKGLAEQFAAIEAAEDQPEAERTEKLRLVNFTMKNRLSPILLGMLSDGQNEPESSDYGEWMDYILSVLDRLRELTKEKIGKITSHEVAAVVSSSTGIPIGKIESGEKEKLLNMEDILRRRVVGQDNALKVLTDAIVESRSGMNKPGQPIGSFFLLGPTGTGKTELAKALAEALFNDEKAMIRFDMSEFKEEHSAALLLGAPPGYVGYEEGGVLVNRIRRQPYAVVLFDEIEKAHSSVYDIFLQIMDEGKLHDRLGKEGDFSNSIVLFTSNVGSEWLSKQINEGKNPSTTDLMEVMGSYFRPEFLARLSEIVPFSPINETMLVRIFEIQLKGVIALLEKQHIDIEITEKAKNLLATRGFTPKYGARQVAGTIRNYIRRPISKMIVAGTLTAENTVVVDVADNGEIDWNVK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9943 - -


  Protein sequence: 828 a.a.    

>T6CP011072 NC_006347:c2297284-2294801 [Bacteroides fragilis YCH46] [TssH]
MDFLNINETVQSVIRISKGVAREYGNASYAPAHLLFALMHKEVGLRSFVESLGKDADYLREWAEVRIEEYPKAAGAGEIM
PDPKVNELFEQADNVRIKWGLLEINPLCLLAAIATPEAGFSTDELRSFPIREREIHDLFTSGMGNMKKSVSTQTDLPGSE
APLWTAGAGNLDKYCTDKTALAADKKVYPIVCRDRETRMMMEILGRMGKPNVLIIGDAGVGKTALVDGLACSIIEGTVPQ
YLKDMTIYELDTGTLIAGATYKGEIEERLKGIIKELSAHGNAILFIDEIHTLIDPKSGNSGAASILKPELAKGNITVIGV
TTVDEYRKLIEPDHALNRRFEVLQVSEPDLASTVNMIQAALERYESYHGVGVDVDSLPECVALAKRYVKERRLPDAAIDL
IDRTLSAVKMINQSGEKDIKGLAEQFAAIEAAEDQPEAERTEKLRLVNFTMKNRLSPILLGMLSDGQNEPESSDYGEWMD
YILSVLDRLRELTKEKIGKITSHEVAAVVSSSTGIPIGKIESGEKEKLLNMEDILRRRVVGQDNALKVLTDAIVESRSGM
NKPGQPIGSFFLLGPTGTGKTELAKALAEALFNDEKAMIRFDMSEFKEEHSAALLLGAPPGYVGYEEGGVLVNRIRRQPY
AVVLFDEIEKAHSSVYDIFLQIMDEGKLHDRLGKEGDFSNSIVLFTSNVGSEWLSKQINEGKNPSTTDLMEVMGSYFRPE
FLARLSEIVPFSPINETMLVRIFEIQLKGVIALLEKQHIDIEITEKAKNLLATRGFTPKYGARQVAGTIRNYIRRPISKM
IVAGTLTAENTVVVDVADNGEIDWNVK*

  Nucleotide sequence: 2484 bp    

>T6CP011072 NC_006347:c2297284-2294801 [Bacteroides fragilis YCH46] [TssH]
ATGGATTTTTTGAACATCAATGAAACAGTTCAGAGCGTAATCCGAATATCAAAAGGTGTCGCCCGTGAGTATGGCAATGC
CAGCTATGCTCCGGCACACCTTTTGTTTGCCTTGATGCACAAAGAGGTAGGTCTGCGTTCGTTTGTCGAATCGTTGGGTA
AGGACGCCGATTACTTGCGTGAATGGGCGGAGGTAAGAATAGAGGAGTACCCCAAGGCTGCCGGCGCAGGCGAGATAATG
CCCGATCCGAAAGTTAACGAACTGTTTGAGCAAGCCGATAATGTACGAATCAAGTGGGGACTGCTGGAAATCAATCCACT
TTGCCTGCTGGCAGCCATTGCTACACCCGAAGCAGGTTTCAGTACGGACGAGTTGCGTTCGTTCCCTATTCGGGAGCGTG
AGATACATGACCTCTTCACGAGCGGAATGGGTAATATGAAAAAATCCGTAAGTACGCAGACTGACCTTCCGGGGAGTGAA
GCCCCCCTATGGACAGCCGGGGCGGGCAATTTAGATAAGTACTGTACGGATAAGACTGCTCTTGCGGCAGACAAGAAAGT
ATATCCTATCGTGTGCCGTGACCGTGAGACACGCATGATGATGGAAATTCTGGGGCGGATGGGTAAGCCCAACGTGCTCA
TCATCGGCGATGCCGGTGTGGGTAAGACTGCCTTGGTAGACGGTTTGGCATGCAGCATCATTGAGGGTACAGTTCCCCAA
TATCTAAAGGACATGACTATCTATGAGCTTGACACAGGAACACTGATTGCGGGTGCTACCTACAAAGGGGAGATAGAAGA
ACGGCTGAAAGGAATCATCAAAGAATTGTCGGCTCACGGCAATGCGATTCTCTTCATTGATGAAATACATACGCTGATCG
ACCCCAAGTCGGGCAACAGCGGAGCGGCAAGCATCCTGAAGCCGGAGCTTGCCAAAGGAAATATAACGGTAATCGGAGTC
ACTACGGTGGACGAATACCGTAAACTAATTGAACCGGACCATGCCCTTAACCGGCGTTTTGAAGTATTGCAAGTATCGGA
ACCTGACCTTGCATCCACCGTAAATATGATACAGGCAGCTTTGGAAAGATATGAAAGCTACCACGGTGTGGGGGTAGATG
TAGATTCGTTGCCGGAATGCGTGGCACTCGCCAAGCGTTATGTCAAGGAACGCCGTTTGCCGGATGCCGCTATTGATTTG
ATAGACCGTACCCTCTCTGCGGTTAAGATGATTAACCAGAGCGGGGAAAAAGATATAAAGGGACTGGCAGAGCAGTTTGC
CGCGATTGAAGCGGCGGAAGACCAGCCCGAAGCGGAGCGCACGGAAAAGTTGCGGTTAGTCAATTTCACCATGAAGAACC
GGTTAAGCCCTATCCTTCTGGGAATGCTCTCCGATGGACAGAATGAACCGGAGTCATCAGACTACGGTGAATGGATGGAT
TATATTTTAAGTGTACTTGACCGATTACGTGAATTGACCAAAGAGAAAATCGGGAAAATCACTTCCCATGAAGTGGCAGC
CGTTGTTTCTTCTTCTACAGGTATCCCTATCGGCAAGATAGAGTCGGGCGAGAAAGAAAAGTTACTCAACATGGAAGATA
TTCTGCGTCGTAGAGTTGTTGGACAGGATAATGCGCTGAAGGTATTGACAGATGCCATTGTCGAATCACGAAGTGGAATG
AACAAACCGGGACAACCGATTGGCTCATTCTTCCTGCTGGGACCTACCGGAACCGGTAAGACTGAATTGGCAAAAGCATT
GGCAGAAGCACTTTTCAATGACGAAAAGGCGATGATTCGTTTTGATATGTCAGAGTTTAAGGAAGAACATTCGGCAGCCC
TGCTATTGGGAGCGCCTCCGGGATACGTGGGCTACGAAGAAGGTGGCGTACTCGTGAACCGGATACGTCGTCAGCCTTAT
GCGGTGGTGCTTTTCGATGAGATAGAGAAAGCCCATTCTTCCGTTTATGACATCTTCCTGCAAATCATGGACGAAGGCAA
GCTACACGACCGTTTGGGCAAAGAGGGTGATTTTTCCAATTCTATCGTACTGTTTACGTCCAATGTAGGTAGCGAATGGC
TTAGCAAGCAGATTAATGAGGGTAAGAATCCTTCTACCACTGACCTGATGGAAGTTATGGGCAGTTATTTCCGTCCGGAG
TTTCTTGCCCGTTTGTCGGAAATCGTGCCTTTCTCTCCTATTAACGAAACAATGCTGGTTCGTATCTTTGAGATACAGTT
AAAGGGAGTTATAGCATTGCTTGAGAAGCAGCATATTGACATTGAGATTACGGAGAAGGCAAAGAACCTGCTCGCTACCC
GTGGCTTCACTCCGAAATACGGAGCACGTCAGGTGGCGGGTACGATACGTAACTATATCCGCCGTCCTATCTCAAAGATG
ATTGTTGCAGGAACATTAACGGCAGAAAATACAGTGGTTGTAGACGTGGCGGATAATGGAGAAATCGATTGGAATGTGAA
ATAA