Detailed information of component protein
Summary
| Component ID | T6CP011067 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS00908  (Type iii) |
| Strain | Bacteroides fragilis YCH46 |
| Replicon | chromosome |
| Sequence | Protein sequence (147 a.a.); Nucleotide sequence (441 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF_RS09170 |
| Coordinate (Strand) | 2290619..2291059 (-) |
| NCBI ID | WP_011202658.1 |
| RefSeq | NC_006347 |
| Uniprot ID | Q64UY5_BACFR |
| KEGG ID | bfr:BF1946 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 6e-19 | 27..128 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-146 | MKQKYYKLPVRLEKLFEGDTRQLERCSELESIDQHIELLLTTYPGEHRFDPKYGCRIWELDFERIVSTEQWKELFTGYVMQAISTYEKRISDITLSVNLQEVVREEVLDNRMIRKRVDITVLATLNSTGAPCGFGYKLYMGPLSNE |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9844 | - | - |
Protein sequence: 147 a.a.
>T6CP011067 NC_006347:c2291059-2290619 [Bacteroides fragilis YCH46] [TssE]
MKQKYYKLPVRLEKLFEGDTRQLERCSELESIDQHIELLLTTYPGEHRFDPKYGCRIWELDFERIVSTEQWKELFTGYVM
QAISTYEKRISDITLSVNLQEVVREEVLDNRMIRKRVDITVLATLNSTGAPCGFGYKLYMGPLSNE*
MKQKYYKLPVRLEKLFEGDTRQLERCSELESIDQHIELLLTTYPGEHRFDPKYGCRIWELDFERIVSTEQWKELFTGYVM
QAISTYEKRISDITLSVNLQEVVREEVLDNRMIRKRVDITVLATLNSTGAPCGFGYKLYMGPLSNE*
Nucleotide sequence: 441 bp
>T6CP011067 NC_006347:c2291059-2290619 [Bacteroides fragilis YCH46] [TssE]
ATGAAACAGAAATACTATAAACTACCGGTACGTTTGGAAAAGCTCTTCGAAGGAGATACCCGGCAACTGGAAAGATGTTC
CGAACTGGAATCCATCGATCAGCACATCGAACTGTTGCTGACCACCTATCCGGGTGAGCACCGTTTCGACCCCAAATACG
GTTGTCGGATTTGGGAGTTGGACTTTGAGCGCATTGTTTCTACCGAACAATGGAAAGAACTGTTTACCGGATACGTGATG
CAGGCGATTTCCACTTATGAGAAACGCATTTCCGACATCACTCTCTCGGTAAACCTACAAGAAGTCGTCAGGGAAGAAGT
TCTGGATAACCGGATGATACGTAAGCGGGTAGATATTACAGTACTCGCCACATTGAATTCCACCGGTGCTCCCTGCGGTT
TCGGTTACAAATTATACATGGGACCTTTATCAAACGAATAA
ATGAAACAGAAATACTATAAACTACCGGTACGTTTGGAAAAGCTCTTCGAAGGAGATACCCGGCAACTGGAAAGATGTTC
CGAACTGGAATCCATCGATCAGCACATCGAACTGTTGCTGACCACCTATCCGGGTGAGCACCGTTTCGACCCCAAATACG
GTTGTCGGATTTGGGAGTTGGACTTTGAGCGCATTGTTTCTACCGAACAATGGAAAGAACTGTTTACCGGATACGTGATG
CAGGCGATTTCCACTTATGAGAAACGCATTTCCGACATCACTCTCTCGGTAAACCTACAAGAAGTCGTCAGGGAAGAAGT
TCTGGATAACCGGATGATACGTAAGCGGGTAGATATTACAGTACTCGCCACATTGAATTCCACCGGTGCTCCCTGCGGTT
TCGGTTACAAATTATACATGGGACCTTTATCAAACGAATAA