Detailed information of component protein


Summary

Component ID T6CP011059
Component protein type TssP
T6SS ID (Type) T6SS00908 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (298 a.a.); Nucleotide sequence (894 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS09115
Coordinate (Strand) 2277219..2278112 (-)
NCBI ID WP_011202651.1
RefSeq NC_006347
Uniprot ID Q64UZ6_BACFR
KEGG ID bfr:BF1935
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
PKD_4 PF18911.2 7.9e-08 40..96
PKD PF00801.22 1e-05 143..180
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-9 MMNKFLNTK
Transmembrane helix 10-27 VLYIFISVIILIMVFLLV
Inside 28-297 MRACSQKQPIQATVTPSDPVVGEEIFFSDSTSGARIWYWEFGNNETSTQRSGHHRFKQKGVYKIRLTVNGNLERYFDVRVKEKTNTEDLHLVHIIAPKEAIQGENIIFRGEGHDEQWRWEFGETGMIDSREKTALYAYTEPGEYEVLLNTENTRYPIRHRINILPYYSENDSTDVMVLIGLDIKEKLQNIADGKPFNVNYNYVVDKYFNNNPNTLVIVNNNKYNDFYSYCQGLHHIGRKETIIQNVIVETEDEESGYITQITVMQIEKKK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.5696 pos: 30-31. MRA-CS. MMNKFLNTKVLYIFISVIILIMVFLLVMRA


  Protein sequence: 298 a.a.    

>T6CP011059 NC_006347:c2278112-2277219 [Bacteroides fragilis YCH46] [TssP]
MMNKFLNTKVLYIFISVIILIMVFLLVMRACSQKQPIQATVTPSDPVVGEEIFFSDSTSGARIWYWEFGNNETSTQRSGH
HRFKQKGVYKIRLTVNGNLERYFDVRVKEKTNTEDLHLVHIIAPKEAIQGENIIFRGEGHDEQWRWEFGETGMIDSREKT
ALYAYTEPGEYEVLLNTENTRYPIRHRINILPYYSENDSTDVMVLIGLDIKEKLQNIADGKPFNVNYNYVVDKYFNNNPN
TLVIVNNNKYNDFYSYCQGLHHIGRKETIIQNVIVETEDEESGYITQITVMQIEKKK*

  Nucleotide sequence: 894 bp    

>T6CP011059 NC_006347:c2278112-2277219 [Bacteroides fragilis YCH46] [TssP]
ATGATGAATAAATTCCTAAATACGAAGGTTCTCTATATCTTTATCTCCGTTATCATACTTATTATGGTTTTTCTGCTGGT
AATGAGAGCTTGCTCGCAGAAGCAGCCGATTCAGGCTACTGTAACTCCGTCTGACCCTGTCGTGGGGGAAGAAATATTTT
TTTCCGATTCCACATCGGGAGCGAGAATCTGGTACTGGGAGTTCGGAAACAACGAGACATCCACACAACGCAGCGGACAC
CATCGGTTCAAGCAAAAAGGGGTGTACAAAATACGACTGACCGTCAACGGAAATCTGGAACGCTACTTTGATGTGAGGGT
AAAAGAGAAGACCAATACGGAAGACCTGCATCTGGTTCATATCATAGCTCCCAAGGAAGCCATTCAGGGAGAAAATATCA
TCTTCCGTGGCGAAGGACACGACGAACAATGGCGCTGGGAGTTCGGAGAGACGGGGATGATTGATTCCCGTGAAAAAACG
GCTCTTTATGCTTATACCGAACCCGGAGAGTACGAAGTATTGCTTAATACGGAGAATACCCGGTATCCCATCAGACACCG
GATAAACATTCTGCCCTACTATTCGGAGAATGATTCTACCGATGTAATGGTGCTCATCGGTTTAGACATCAAAGAGAAGT
TGCAGAACATTGCAGACGGTAAACCCTTTAATGTAAACTACAACTATGTCGTGGACAAGTATTTTAATAATAACCCGAAC
ACGCTGGTTATTGTCAACAACAATAAATATAACGACTTTTATTCTTATTGCCAAGGACTGCACCATATCGGCAGAAAAGA
AACGATTATCCAGAATGTCATCGTAGAGACGGAGGATGAAGAGAGCGGATATATTACCCAAATAACGGTTATGCAAATCG
AAAAAAAGAAATGA