Detailed information of component protein
Summary
| Component ID | T6CP012402 |
| Component protein type | PAAR |
| T6SS ID (Type) | T6SS00908  (Type iii) |
| Strain | Bacteroides fragilis YCH46 |
| Replicon | chromosome |
| Sequence | Protein sequence (229 a.a.); Nucleotide sequence (687 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF_RS09155 |
| Coordinate (Strand) | 2286190..2286876 (-) |
| NCBI ID | WP_008768470.1 |
| RefSeq | NC_006347 |
| Uniprot ID | Q64UY8_BACFR, D1JLP6_BACFG, E1WVT7_BACF6 |
| KEGG ID | bfg:BF638R_1980, bfr:BF1943 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| PAAR_motif | PF05488.15 | 3.2e-14 | 18..85 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-228 | MKQIVTVTLNHICPMVTGITPHVGGPIIGPGCPGVLVNGTPVSLMGDACVCCGPPDMIAQGYPGIMVDGIPVVVQNCMTAHGGTIPMGVPGVTVGNATPIEPMTMHIKRIPFPRIRVIDKIGAAISGNSKRLKQAADNQNDLRKKAFREELAIYNVHWEREEVFTDEGFMRHKITVVADTSGYEEGETITFTITPDDIDPDFGLQPDEKQVEGTVENGRVRAEWLVEI |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| SP(Sec/SPI) | 0.5299 | pos: 18-19. VTG-IT. | MKQIVTVTLNHICPMVTG |
Protein sequence: 229 a.a.
>T6CP012402 NC_006347:c2286876-2286190 [Bacteroides fragilis YCH46] [PAAR]
MKQIVTVTLNHICPMVTGITPHVGGPIIGPGCPGVLVNGTPVSLMGDACVCCGPPDMIAQGYPGIMVDGIPVVVQNCMTA
HGGTIPMGVPGVTVGNATPIEPMTMHIKRIPFPRIRVIDKIGAAISGNSKRLKQAADNQNDLRKKAFREELAIYNVHWER
EEVFTDEGFMRHKITVVADTSGYEEGETITFTITPDDIDPDFGLQPDEKQVEGTVENGRVRAEWLVEI*
MKQIVTVTLNHICPMVTGITPHVGGPIIGPGCPGVLVNGTPVSLMGDACVCCGPPDMIAQGYPGIMVDGIPVVVQNCMTA
HGGTIPMGVPGVTVGNATPIEPMTMHIKRIPFPRIRVIDKIGAAISGNSKRLKQAADNQNDLRKKAFREELAIYNVHWER
EEVFTDEGFMRHKITVVADTSGYEEGETITFTITPDDIDPDFGLQPDEKQVEGTVENGRVRAEWLVEI*
Nucleotide sequence: 687 bp
>T6CP012402 NC_006347:c2286876-2286190 [Bacteroides fragilis YCH46] [PAAR]
ATGAAACAGATTGTGACAGTAACTTTAAATCATATATGTCCAATGGTCACAGGGATAACACCCCATGTGGGAGGTCCAAT
CATAGGTCCCGGTTGTCCGGGAGTATTGGTAAATGGAACACCGGTATCCCTTATGGGAGATGCCTGCGTATGTTGTGGCC
CTCCTGACATGATAGCGCAAGGATATCCGGGAATAATGGTTGATGGTATCCCTGTGGTCGTACAAAACTGTATGACAGCC
CACGGAGGCACTATCCCCATGGGCGTGCCTGGAGTAACGGTAGGCAATGCTACACCGATAGAGCCCATGACAATGCACAT
TAAGAGAATACCCTTTCCTCGGATTCGCGTAATCGATAAAATAGGAGCGGCTATCTCGGGAAACTCGAAGAGACTAAAAC
AGGCTGCTGACAATCAAAATGACTTGCGCAAAAAAGCATTTCGGGAGGAACTGGCTATATACAATGTGCATTGGGAAAGA
GAAGAGGTATTTACCGACGAAGGATTTATGCGGCATAAAATAACCGTTGTGGCCGACACGTCTGGATATGAAGAGGGTGA
AACCATTACTTTTACCATTACCCCCGACGATATAGACCCTGACTTCGGGCTACAACCCGATGAAAAGCAAGTGGAAGGAA
CGGTGGAAAATGGTCGTGTCCGTGCGGAATGGTTAGTTGAAATTTGA
ATGAAACAGATTGTGACAGTAACTTTAAATCATATATGTCCAATGGTCACAGGGATAACACCCCATGTGGGAGGTCCAAT
CATAGGTCCCGGTTGTCCGGGAGTATTGGTAAATGGAACACCGGTATCCCTTATGGGAGATGCCTGCGTATGTTGTGGCC
CTCCTGACATGATAGCGCAAGGATATCCGGGAATAATGGTTGATGGTATCCCTGTGGTCGTACAAAACTGTATGACAGCC
CACGGAGGCACTATCCCCATGGGCGTGCCTGGAGTAACGGTAGGCAATGCTACACCGATAGAGCCCATGACAATGCACAT
TAAGAGAATACCCTTTCCTCGGATTCGCGTAATCGATAAAATAGGAGCGGCTATCTCGGGAAACTCGAAGAGACTAAAAC
AGGCTGCTGACAATCAAAATGACTTGCGCAAAAAAGCATTTCGGGAGGAACTGGCTATATACAATGTGCATTGGGAAAGA
GAAGAGGTATTTACCGACGAAGGATTTATGCGGCATAAAATAACCGTTGTGGCCGACACGTCTGGATATGAAGAGGGTGA
AACCATTACTTTTACCATTACCCCCGACGATATAGACCCTGACTTCGGGCTACAACCCGATGAAAAGCAAGTGGAAGGAA
CGGTGGAAAATGGTCGTGTCCGTGCGGAATGGTTAGTTGAAATTTGA