Detailed information of component protein
Summary
| Component ID | T6CP011075 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00908  (Type iii) |
| Strain | Bacteroides fragilis YCH46 |
| Replicon | chromosome |
| Sequence | Protein sequence (130 a.a.); Nucleotide sequence (390 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF_RS09225 |
| Coordinate (Strand) | 2299231..2299620 (-) |
| NCBI ID | WP_005787106.1 |
| RefSeq | NC_006347 |
| Uniprot ID | Q5LDT1_BACFN, Q64UX4_BACFR, A0A081TQ32_BACFG, E1WVV1_BACF6, A0A0E2AP37_BACFG |
| KEGG ID | bfb:VU15_08415, bfr:BF1957, bfg:BF638R_1994, bfs:BF9343_1943 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssD | PF17642.3 | 1.7e-46 | 1..128 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-129 | MAFRATLSFAGKEFDVLDCTYSLKRDVDSKGRPSSNIYGGQIRLHVESTDDTSILENMTNQFKPHSGSIVFKKGDEEAKMKELTWENGYITEFTENIDIVGSQPMTITFVVSAQVIKIGGAQFEQNWPK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9713 | - | - |
Protein sequence: 130 a.a.
>T6CP011075 NC_006347:c2299620-2299231 [Bacteroides fragilis YCH46] [TssD]
MAFRATLSFAGKEFDVLDCTYSLKRDVDSKGRPSSNIYGGQIRLHVESTDDTSILENMTNQFKPHSGSIVFKKGDEEAKM
KELTWENGYITEFTENIDIVGSQPMTITFVVSAQVIKIGGAQFEQNWPK*
MAFRATLSFAGKEFDVLDCTYSLKRDVDSKGRPSSNIYGGQIRLHVESTDDTSILENMTNQFKPHSGSIVFKKGDEEAKM
KELTWENGYITEFTENIDIVGSQPMTITFVVSAQVIKIGGAQFEQNWPK*
Nucleotide sequence: 390 bp
>T6CP011075 NC_006347:c2299620-2299231 [Bacteroides fragilis YCH46] [TssD]
ATGGCATTTAGAGCAACCTTAAGCTTTGCAGGAAAAGAGTTTGACGTGCTGGATTGCACGTACAGTCTCAAGCGAGATGT
GGATTCCAAAGGACGCCCATCTTCAAACATTTATGGTGGACAAATTCGTCTGCATGTGGAATCGACTGATGATACTTCGA
TTCTGGAGAACATGACCAATCAGTTTAAACCTCATTCCGGCAGCATCGTCTTCAAAAAAGGAGATGAAGAAGCCAAGATG
AAGGAACTTACCTGGGAAAACGGATACATTACCGAATTTACCGAAAACATCGACATTGTCGGCTCGCAGCCGATGACTAT
CACTTTTGTCGTATCGGCTCAGGTAATCAAGATTGGTGGCGCACAATTTGAACAGAATTGGCCGAAGTAA
ATGGCATTTAGAGCAACCTTAAGCTTTGCAGGAAAAGAGTTTGACGTGCTGGATTGCACGTACAGTCTCAAGCGAGATGT
GGATTCCAAAGGACGCCCATCTTCAAACATTTATGGTGGACAAATTCGTCTGCATGTGGAATCGACTGATGATACTTCGA
TTCTGGAGAACATGACCAATCAGTTTAAACCTCATTCCGGCAGCATCGTCTTCAAAAAAGGAGATGAAGAAGCCAAGATG
AAGGAACTTACCTGGGAAAACGGATACATTACCGAATTTACCGAAAACATCGACATTGTCGGCTCGCAGCCGATGACTAT
CACTTTTGTCGTATCGGCTCAGGTAATCAAGATTGGTGGCGCACAATTTGAACAGAATTGGCCGAAGTAA