Detailed information of component protein


Summary

Component ID T6CP011060
Component protein type TssO
T6SS ID (Type) T6SS00908 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (176 a.a.); Nucleotide sequence (528 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS09120
Coordinate (Strand) 2278109..2278636 (-)
NCBI ID WP_008768464.1
RefSeq NC_006347
Uniprot ID A0A015Z1N0_BACFG, Q64UZ5_BACFR, A0A5M5VWX8_BACFG, E1WVH2_BACF6
KEGG ID bfr:BF1936, bfg:BF638R_1973
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssO PF17561.4 2.6e-52 13..160
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-18 MSITPKNKSSKAVSERER
Transmembrane helix 19-41 FIGFVYVLTLFIVITGACGFILF
Outside 42-175 KYAGTRHIFSNKIMVIKKMERQKEFQNIQSVQIVSADTLFSRIEQFEPGVNASYEENDIKFLINDLAKQWEKNSFDKRNKMFWHLASVYEMWFADKKELWSKQDNIVKFRKNLEECEVGLQKKEGELKNKGGKP


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8560 - -


  Protein sequence: 176 a.a.    

>T6CP011060 NC_006347:c2278636-2278109 [Bacteroides fragilis YCH46] [TssO]
MSITPKNKSSKAVSERERFIGFVYVLTLFIVITGACGFILFKYAGTRHIFSNKIMVIKKMERQKEFQNIQSVQIVSADTL
FSRIEQFEPGVNASYEENDIKFLINDLAKQWEKNSFDKRNKMFWHLASVYEMWFADKKELWSKQDNIVKFRKNLEECEVG
LQKKEGELKNKGGKP*

  Nucleotide sequence: 528 bp    

>T6CP011060 NC_006347:c2278636-2278109 [Bacteroides fragilis YCH46] [TssO]
ATGAGCATAACCCCTAAAAATAAAAGCAGCAAAGCCGTTAGCGAGCGTGAACGCTTTATCGGATTTGTATATGTGCTTAC
CCTGTTTATTGTTATCACAGGAGCCTGTGGATTTATTCTTTTCAAGTATGCAGGGACACGCCACATCTTCTCCAATAAAA
TAATGGTCATTAAAAAGATGGAGCGGCAAAAGGAATTTCAAAACATACAATCTGTACAGATTGTAAGCGCAGATACCCTA
TTTTCACGTATTGAACAGTTTGAGCCGGGCGTCAATGCCTCTTATGAGGAAAATGATATCAAGTTCCTGATAAACGACCT
TGCCAAACAATGGGAGAAAAACAGCTTTGACAAGCGCAATAAGATGTTCTGGCATCTCGCTTCGGTATATGAAATGTGGT
TTGCCGACAAGAAAGAACTATGGAGCAAGCAGGATAACATAGTGAAGTTCAGGAAAAATCTGGAGGAGTGCGAAGTCGGA
CTCCAGAAGAAGGAAGGCGAACTTAAAAATAAAGGAGGCAAGCCATGA