Detailed information of component protein
Summary
| Component ID | T6CP011070 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00908  (Type iii) |
| Strain | Bacteroides fragilis YCH46 |
| Replicon | chromosome |
| Sequence | Protein sequence (135 a.a.); Nucleotide sequence (405 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF_RS09200 |
| Coordinate (Strand) | 2293947..2294351 (-) |
| NCBI ID | WP_011202660.1 |
| RefSeq | NC_006347 |
| Uniprot ID | A0A017NBN7_BACFG, Q64UX9_BACFR, A0A2M9V992_BACFG |
| KEGG ID | bfr:BF1952 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssD | PF17642.3 | 2.6e-32 | 12..133 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-134 | MGLFSLPKIDSDLTARFILDGKEYEMSQFSISFGQSVDHKGQPQDEVRGGRMLVVLTQALPDNLYRWAMTSSPKNGEIVFRSKTANSPLRIMFNNAYCVSFQRQVGNASGMISKLLISPDEILMNGISFDNHWG |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9917 | - | - |
Protein sequence: 135 a.a.
>T6CP011070 NC_006347:c2294351-2293947 [Bacteroides fragilis YCH46] [TssD]
MGLFSLPKIDSDLTARFILDGKEYEMSQFSISFGQSVDHKGQPQDEVRGGRMLVVLTQALPDNLYRWAMTSSPKNGEIVF
RSKTANSPLRIMFNNAYCVSFQRQVGNASGMISKLLISPDEILMNGISFDNHWG*
MGLFSLPKIDSDLTARFILDGKEYEMSQFSISFGQSVDHKGQPQDEVRGGRMLVVLTQALPDNLYRWAMTSSPKNGEIVF
RSKTANSPLRIMFNNAYCVSFQRQVGNASGMISKLLISPDEILMNGISFDNHWG*
Nucleotide sequence: 405 bp
>T6CP011070 NC_006347:c2294351-2293947 [Bacteroides fragilis YCH46] [TssD]
ATGGGATTATTTAGCTTACCAAAGATAGACAGCGATTTGACTGCACGATTCATCCTTGACGGCAAAGAGTATGAGATGAG
CCAATTTAGCATAAGTTTCGGACAGTCGGTTGATCATAAAGGTCAACCGCAAGACGAAGTCCGTGGCGGTAGAATGCTTG
TTGTTTTGACGCAGGCGCTACCGGACAATCTTTATCGTTGGGCAATGACTTCATCTCCTAAAAACGGGGAGATTGTATTT
CGTTCTAAAACCGCCAATTCACCTTTGCGGATAATGTTTAATAATGCGTATTGTGTGAGTTTTCAGCGTCAGGTTGGTAA
TGCTTCCGGTATGATTTCAAAACTATTAATTTCTCCTGATGAGATTCTGATGAATGGAATTAGCTTTGATAATCACTGGG
GTTAA
ATGGGATTATTTAGCTTACCAAAGATAGACAGCGATTTGACTGCACGATTCATCCTTGACGGCAAAGAGTATGAGATGAG
CCAATTTAGCATAAGTTTCGGACAGTCGGTTGATCATAAAGGTCAACCGCAAGACGAAGTCCGTGGCGGTAGAATGCTTG
TTGTTTTGACGCAGGCGCTACCGGACAATCTTTATCGTTGGGCAATGACTTCATCTCCTAAAAACGGGGAGATTGTATTT
CGTTCTAAAACCGCCAATTCACCTTTGCGGATAATGTTTAATAATGCGTATTGTGTGAGTTTTCAGCGTCAGGTTGGTAA
TGCTTCCGGTATGATTTCAAAACTATTAATTTCTCCTGATGAGATTCTGATGAATGGAATTAGCTTTGATAATCACTGGG
GTTAA