Detailed information of component protein
Summary
| Component ID | T6CP011061 |
| Component protein type | TssO |
| T6SS ID (Type) | T6SS00908  (Type iii) |
| Strain | Bacteroides fragilis YCH46 |
| Replicon | chromosome |
| Sequence | Protein sequence (168 a.a.); Nucleotide sequence (504 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF_RS09125 |
| Coordinate (Strand) | 2278649..2279152 (-) |
| NCBI ID | WP_011202652.1 |
| RefSeq | NC_006347 |
| Uniprot ID | Q64UZ4_BACFR |
| KEGG ID | bfr:BF1937 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssO | PF17561.4 | 2.5e-07 | 5..149 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-12 | MKAKNSEKIIRG |
| Transmembrane helix | 13-35 | YLEFAGGLLISTALSMALLTGFI |
| Outside | 36-167 | HTNESEYKLMESKTQEYDKIYARQIALVDKVDSLYNYLVLMGSNDRLNQVVLQKVISTRKMELIEELQIMDSKDVLLYKKLASQINVFLDTKEAIRKAVIEESLVRKDLMRCIQDNKQATRKLTLGNISVEK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.8621 | - | - |
Protein sequence: 168 a.a.
>T6CP011061 NC_006347:c2279152-2278649 [Bacteroides fragilis YCH46] [TssO]
MKAKNSEKIIRGYLEFAGGLLISTALSMALLTGFIHTNESEYKLMESKTQEYDKIYARQIALVDKVDSLYNYLVLMGSND
RLNQVVLQKVISTRKMELIEELQIMDSKDVLLYKKLASQINVFLDTKEAIRKAVIEESLVRKDLMRCIQDNKQATRKLTL
GNISVEK*
MKAKNSEKIIRGYLEFAGGLLISTALSMALLTGFIHTNESEYKLMESKTQEYDKIYARQIALVDKVDSLYNYLVLMGSND
RLNQVVLQKVISTRKMELIEELQIMDSKDVLLYKKLASQINVFLDTKEAIRKAVIEESLVRKDLMRCIQDNKQATRKLTL
GNISVEK*
Nucleotide sequence: 504 bp
>T6CP011061 NC_006347:c2279152-2278649 [Bacteroides fragilis YCH46] [TssO]
ATGAAAGCAAAGAACAGTGAGAAAATCATCCGTGGATATTTGGAGTTTGCCGGCGGACTGTTAATCAGTACGGCTTTGAG
CATGGCACTGCTCACAGGCTTTATCCATACGAATGAAAGCGAATATAAGCTAATGGAATCCAAAACGCAAGAATACGATA
AGATTTACGCCAGACAGATTGCCCTGGTGGATAAGGTGGATTCGCTGTATAACTACCTGGTGCTGATGGGCAGTAACGAC
CGGCTGAATCAGGTGGTGCTCCAAAAAGTTATCAGTACACGCAAGATGGAACTTATCGAGGAACTGCAAATAATGGATAG
CAAGGATGTACTTCTGTACAAAAAACTGGCTTCGCAAATCAACGTGTTTCTGGACACTAAAGAAGCCATACGTAAAGCGG
TTATTGAAGAAAGCCTTGTGAGAAAAGACCTGATGCGGTGCATTCAGGACAATAAACAGGCTACCCGAAAGCTGACATTG
GGAAACATTAGTGTAGAAAAGTAA
ATGAAAGCAAAGAACAGTGAGAAAATCATCCGTGGATATTTGGAGTTTGCCGGCGGACTGTTAATCAGTACGGCTTTGAG
CATGGCACTGCTCACAGGCTTTATCCATACGAATGAAAGCGAATATAAGCTAATGGAATCCAAAACGCAAGAATACGATA
AGATTTACGCCAGACAGATTGCCCTGGTGGATAAGGTGGATTCGCTGTATAACTACCTGGTGCTGATGGGCAGTAACGAC
CGGCTGAATCAGGTGGTGCTCCAAAAAGTTATCAGTACACGCAAGATGGAACTTATCGAGGAACTGCAAATAATGGATAG
CAAGGATGTACTTCTGTACAAAAAACTGGCTTCGCAAATCAACGTGTTTCTGGACACTAAAGAAGCCATACGTAAAGCGG
TTATTGAAGAAAGCCTTGTGAGAAAAGACCTGATGCGGTGCATTCAGGACAATAAACAGGCTACCCGAAAGCTGACATTG
GGAAACATTAGTGTAGAAAAGTAA