Detailed information of component protein
Summary
Component ID | T6CP011061 |
Component protein type | TssO |
T6SS ID (Type) | T6SS00908 (Type iii) |
Strain | Bacteroides fragilis YCH46 |
Replicon | chromosome |
Sequence | Protein sequence (168 a.a.); Nucleotide sequence (504 bp) |
Reference |
External database links
Locus tag (Gene) | BF_RS09125 |
Coordinate (Strand) | 2278649..2279152 (-) |
NCBI ID | WP_011202652.1 |
RefSeq | NC_006347 |
Uniprot ID | Q64UZ4_BACFR |
KEGG ID | bfr:BF1937 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
TssO | PF17561.4 | 2.5e-07 | 5..149 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Inside | 1-12 | MKAKNSEKIIRG |
Transmembrane helix | 13-35 | YLEFAGGLLISTALSMALLTGFI |
Outside | 36-167 | HTNESEYKLMESKTQEYDKIYARQIALVDKVDSLYNYLVLMGSNDRLNQVVLQKVISTRKMELIEELQIMDSKDVLLYKKLASQINVFLDTKEAIRKAVIEESLVRKDLMRCIQDNKQATRKLTLGNISVEK |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.8621 | - | - |
Protein sequence: 168 a.a.
>T6CP011061 NC_006347:c2279152-2278649 [Bacteroides fragilis YCH46] [TssO]
MKAKNSEKIIRGYLEFAGGLLISTALSMALLTGFIHTNESEYKLMESKTQEYDKIYARQIALVDKVDSLYNYLVLMGSND
RLNQVVLQKVISTRKMELIEELQIMDSKDVLLYKKLASQINVFLDTKEAIRKAVIEESLVRKDLMRCIQDNKQATRKLTL
GNISVEK*
MKAKNSEKIIRGYLEFAGGLLISTALSMALLTGFIHTNESEYKLMESKTQEYDKIYARQIALVDKVDSLYNYLVLMGSND
RLNQVVLQKVISTRKMELIEELQIMDSKDVLLYKKLASQINVFLDTKEAIRKAVIEESLVRKDLMRCIQDNKQATRKLTL
GNISVEK*
Nucleotide sequence: 504 bp
>T6CP011061 NC_006347:c2279152-2278649 [Bacteroides fragilis YCH46] [TssO]
ATGAAAGCAAAGAACAGTGAGAAAATCATCCGTGGATATTTGGAGTTTGCCGGCGGACTGTTAATCAGTACGGCTTTGAG
CATGGCACTGCTCACAGGCTTTATCCATACGAATGAAAGCGAATATAAGCTAATGGAATCCAAAACGCAAGAATACGATA
AGATTTACGCCAGACAGATTGCCCTGGTGGATAAGGTGGATTCGCTGTATAACTACCTGGTGCTGATGGGCAGTAACGAC
CGGCTGAATCAGGTGGTGCTCCAAAAAGTTATCAGTACACGCAAGATGGAACTTATCGAGGAACTGCAAATAATGGATAG
CAAGGATGTACTTCTGTACAAAAAACTGGCTTCGCAAATCAACGTGTTTCTGGACACTAAAGAAGCCATACGTAAAGCGG
TTATTGAAGAAAGCCTTGTGAGAAAAGACCTGATGCGGTGCATTCAGGACAATAAACAGGCTACCCGAAAGCTGACATTG
GGAAACATTAGTGTAGAAAAGTAA
ATGAAAGCAAAGAACAGTGAGAAAATCATCCGTGGATATTTGGAGTTTGCCGGCGGACTGTTAATCAGTACGGCTTTGAG
CATGGCACTGCTCACAGGCTTTATCCATACGAATGAAAGCGAATATAAGCTAATGGAATCCAAAACGCAAGAATACGATA
AGATTTACGCCAGACAGATTGCCCTGGTGGATAAGGTGGATTCGCTGTATAACTACCTGGTGCTGATGGGCAGTAACGAC
CGGCTGAATCAGGTGGTGCTCCAAAAAGTTATCAGTACACGCAAGATGGAACTTATCGAGGAACTGCAAATAATGGATAG
CAAGGATGTACTTCTGTACAAAAAACTGGCTTCGCAAATCAACGTGTTTCTGGACACTAAAGAAGCCATACGTAAAGCGG
TTATTGAAGAAAGCCTTGTGAGAAAAGACCTGATGCGGTGCATTCAGGACAATAAACAGGCTACCCGAAAGCTGACATTG
GGAAACATTAGTGTAGAAAAGTAA