Detailed information of component protein


Summary

Component ID T6CP011073
Component protein type TssC
T6SS ID (Type) T6SS00908 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (460 a.a.); Nucleotide sequence (1380 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS09215
Coordinate (Strand) 2297297..2298676 (-)
NCBI ID WP_005787102.1
RefSeq NC_006347
Uniprot ID A0A015XHV0_BACFG, A0A017NDT4_BACFG, Q64UX6_BACFR, A0A1C0WU84_BACFG, E1WVU9_BACF6
KEGG ID bfr:BF1955, bfg:BF638R_1992
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssC PF17541.4 3.4e-235 31..458
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-459 MEDNKNKSEVQAQETVQVSYKEKNGESSLASALDVLSRFGGFNFLESTVDGVQNLNPERKARKKIFLTDEQKQEEREVLKNKIDMWIDLLNSSSAVTEMIATSKAKSEAAASHLAKSQLVAVQSVRDMEQAYRGVMLFYKNTEADKVNNVTIVNASKEQLTDLDNPRFIDFVARELKQNYDKLDLRQNYSLLAIPGYLGSNKVLEKWAKIAYENKVMLYTDFADLDKPEDVVELFSSSNMASGEAFKSNTCMTCNWLVGRAGYREIGEEEDLHVSPSIALMGKVYTTLMSQVTAGKKYGGINEIDAVVFPLKKSEISQLEKMGLIPMVNEYGKVMAFSAKTLFNGDNLGLQTYSVVRVFDYITKVLFDFLNRRSFENWSSKTERDLRGQIVQYLDSVQGADRLIEKFKIIRFEQDQKQKDRIYLDIHMTPFFPAKSFVIKLDGTKGDDGTNWNTNYEQA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9889 - -


  Protein sequence: 460 a.a.    

>T6CP011073 NC_006347:c2298676-2297297 [Bacteroides fragilis YCH46] [TssC]
MEDNKNKSEVQAQETVQVSYKEKNGESSLASALDVLSRFGGFNFLESTVDGVQNLNPERKARKKIFLTDEQKQEEREVLK
NKIDMWIDLLNSSSAVTEMIATSKAKSEAAASHLAKSQLVAVQSVRDMEQAYRGVMLFYKNTEADKVNNVTIVNASKEQL
TDLDNPRFIDFVARELKQNYDKLDLRQNYSLLAIPGYLGSNKVLEKWAKIAYENKVMLYTDFADLDKPEDVVELFSSSNM
ASGEAFKSNTCMTCNWLVGRAGYREIGEEEDLHVSPSIALMGKVYTTLMSQVTAGKKYGGINEIDAVVFPLKKSEISQLE
KMGLIPMVNEYGKVMAFSAKTLFNGDNLGLQTYSVVRVFDYITKVLFDFLNRRSFENWSSKTERDLRGQIVQYLDSVQGA
DRLIEKFKIIRFEQDQKQKDRIYLDIHMTPFFPAKSFVIKLDGTKGDDGTNWNTNYEQA*

  Nucleotide sequence: 1380 bp    

>T6CP011073 NC_006347:c2298676-2297297 [Bacteroides fragilis YCH46] [TssC]
ATGGAAGATAATAAAAATAAGTCTGAAGTTCAGGCGCAAGAAACCGTTCAAGTTTCCTATAAAGAGAAAAACGGGGAATC
CTCTCTGGCTTCGGCACTGGATGTGTTGTCCAGATTCGGCGGTTTCAATTTTCTGGAATCAACAGTAGATGGTGTTCAGA
ACCTGAACCCCGAGCGTAAGGCACGCAAAAAGATATTCTTAACCGATGAACAGAAGCAAGAAGAACGGGAAGTGCTGAAG
AATAAGATAGATATGTGGATCGACCTGCTGAACTCATCATCGGCAGTGACGGAAATGATTGCCACTTCTAAAGCTAAATC
GGAAGCTGCCGCATCGCATCTTGCCAAAAGCCAATTGGTGGCAGTGCAGAGTGTGAGGGATATGGAACAGGCATACCGTG
GAGTGATGTTGTTCTATAAGAATACGGAAGCGGACAAAGTGAACAACGTGACGATAGTCAATGCTTCCAAAGAACAACTG
ACCGACCTCGACAATCCCCGCTTCATTGATTTCGTTGCCCGCGAACTAAAACAGAACTATGACAAGTTGGATTTACGTCA
AAATTACTCACTGTTAGCCATTCCGGGCTATCTTGGTTCGAATAAGGTGCTTGAAAAATGGGCGAAAATCGCTTATGAGA
ATAAAGTGATGCTCTATACGGACTTTGCCGACCTTGATAAGCCGGAAGATGTGGTGGAACTGTTCTCTTCCTCCAATATG
GCAAGTGGGGAGGCCTTCAAAAGCAATACCTGCATGACCTGCAACTGGCTGGTGGGACGTGCCGGATACCGGGAAATCGG
TGAAGAGGAAGACCTCCATGTTTCTCCGTCTATTGCTTTGATGGGTAAAGTTTACACCACTCTGATGTCTCAGGTAACTG
CCGGTAAGAAGTATGGCGGCATTAATGAAATAGATGCGGTGGTATTCCCGTTGAAGAAAAGCGAAATCTCACAACTGGAG
AAAATGGGTTTAATTCCGATGGTTAATGAATATGGTAAAGTGATGGCGTTCTCCGCAAAGACATTGTTCAACGGTGACAA
TCTGGGATTGCAAACTTATTCTGTGGTACGTGTATTCGACTATATTACCAAGGTATTGTTTGATTTCCTGAACCGCCGTT
CGTTCGAGAACTGGAGTTCTAAAACCGAACGTGACCTGAGAGGGCAGATTGTACAGTATCTTGATAGTGTACAGGGAGCC
GACCGCCTTATCGAAAAATTCAAGATAATCCGTTTCGAGCAAGACCAAAAGCAGAAGGACCGTATTTATCTGGATATTCA
CATGACTCCGTTCTTCCCTGCCAAGAGCTTTGTTATCAAGTTGGACGGCACGAAAGGTGATGATGGTACAAACTGGAATA
CAAATTACGAACAGGCGTAA