Detailed information of component protein


Summary

Component ID T6CP011063
Component protein type TssK
T6SS ID (Type) T6SS00908 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (381 a.a.); Nucleotide sequence (1143 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS09135
Coordinate (Strand) 2280116..2281258 (-)
NCBI ID WP_011202653.1
RefSeq NC_006347
Uniprot ID Q64UZ2_BACFR
KEGG ID bfr:BF1939
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-380 MAKKNLVNWSDCMPLSAAIFNQHDDYFLNSIRDSIEVRTNSYNYGLLPARQNRDGENGIRISQHVTGHIEVRLKYCDAVTASGIRIQFDATETGSELVKNYSVESDTRKNITQWDIILSVDPFHRVGSGDPNPEEVPPRHPNALPSYRLFVMPKGEINISELGSHYLTIGRIRKDAERFMVDADFIPPCTTMKSHPELQEYHAKFGNMFRSLENYSKIIIAKIHNRDNRGKLGAHISLICREMLRYLATLQFTYTNKGLYNAPIDVLEAVSSLAHIMYVSFSYLSGTQKEETQKYFYEWSDVTPGSFDEQLADTLEMLYEHTDIRASMVRAYSFMYTLTELWQRLSTLEYIGQHKENIVVSERTTGNNTTGQNKTWSIMD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9809 - -


  Protein sequence: 381 a.a.    

>T6CP011063 NC_006347:c2281258-2280116 [Bacteroides fragilis YCH46] [TssK]
MAKKNLVNWSDCMPLSAAIFNQHDDYFLNSIRDSIEVRTNSYNYGLLPARQNRDGENGIRISQHVTGHIEVRLKYCDAVT
ASGIRIQFDATETGSELVKNYSVESDTRKNITQWDIILSVDPFHRVGSGDPNPEEVPPRHPNALPSYRLFVMPKGEINIS
ELGSHYLTIGRIRKDAERFMVDADFIPPCTTMKSHPELQEYHAKFGNMFRSLENYSKIIIAKIHNRDNRGKLGAHISLIC
REMLRYLATLQFTYTNKGLYNAPIDVLEAVSSLAHIMYVSFSYLSGTQKEETQKYFYEWSDVTPGSFDEQLADTLEMLYE
HTDIRASMVRAYSFMYTLTELWQRLSTLEYIGQHKENIVVSERTTGNNTTGQNKTWSIMD*

  Nucleotide sequence: 1143 bp    

>T6CP011063 NC_006347:c2281258-2280116 [Bacteroides fragilis YCH46] [TssK]
ATGGCAAAGAAAAATTTAGTGAACTGGTCGGACTGTATGCCGCTGTCAGCCGCCATCTTCAACCAACATGACGATTACTT
TCTGAACAGCATTCGCGACAGCATAGAAGTACGAACCAACAGTTATAACTACGGGCTGTTGCCCGCACGGCAAAACAGGG
ATGGCGAAAACGGCATCCGTATCAGCCAGCACGTGACCGGACACATCGAAGTGCGGCTGAAATACTGCGATGCGGTCACC
GCTTCGGGTATCCGCATCCAATTTGATGCCACCGAAACGGGAAGCGAATTAGTGAAGAACTATTCTGTAGAATCGGATAC
CCGTAAGAATATCACGCAATGGGACATTATCCTCTCCGTGGATCCGTTCCACCGGGTAGGCTCGGGTGACCCCAATCCGG
AGGAAGTTCCACCCCGCCATCCGAACGCCTTGCCCTCCTATCGGCTGTTTGTGATGCCTAAAGGAGAAATCAATATCAGT
GAACTGGGTTCCCATTACCTGACCATCGGACGTATCCGCAAGGATGCCGAACGATTCATGGTAGATGCCGACTTTATCCC
GCCCTGTACGACGATGAAAAGCCACCCTGAACTGCAAGAGTATCATGCCAAGTTCGGAAATATGTTCCGCTCACTGGAGA
ATTACAGCAAAATTATCATAGCCAAAATACATAACAGGGATAATCGCGGCAAACTGGGTGCGCACATCTCTCTGATATGT
CGGGAGATGCTCCGCTACCTCGCCACCCTGCAATTCACTTATACCAATAAAGGGCTGTACAATGCTCCTATAGACGTATT
GGAAGCCGTATCGAGTCTGGCGCATATCATGTATGTAAGTTTCAGCTACCTATCAGGGACGCAAAAGGAGGAAACACAGA
AATATTTCTACGAATGGAGCGACGTGACGCCCGGTTCGTTCGACGAGCAACTCGCCGATACGCTGGAGATGCTGTACGAA
CATACGGATATCCGGGCTTCGATGGTTCGTGCCTATTCGTTTATGTACACGCTTACCGAATTGTGGCAACGGCTCAGTAC
GCTGGAATATATCGGTCAGCATAAGGAGAATATTGTGGTATCGGAACGCACAACGGGAAACAATACTACGGGACAAAACA
AAACATGGAGCATAATGGATTGA