Detailed information of component protein


Summary

Component ID T6CP011065
Component protein type TssI
T6SS ID (Type) T6SS00908 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (617 a.a.); Nucleotide sequence (1851 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS09160
Coordinate (Strand) 2286895..2288745 (-)
NCBI ID WP_011202657.1
RefSeq NC_006347
Uniprot ID Q64UY7_BACFR
KEGG ID bfr:BF1944
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_base_V PF04717.14 3.1e-18 369..448
Phage_GPD PF05954.13 6.9e-11 60..188
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-616 MASTNLDAVSVEIKVAGKVCDYVTMELFQSVSTHHRFKIKVNYRPDKPSVWAIGPDVIFKQLGEKVSIIMTHHESGEKTEFHGLISDIHVEGFDGNQGFVILEGGSPTILLDRDPAMDCYVEQNLNTIVSDILDKSGVKMNVTNNPKHTDIIPYVARYKETSYGFLSRLLRSYGEWFYYNGETLQIGDPEIETESRAGYDVDLTGVSINATIRSLNHSTYEFDPVNDKFYYDYSGTPKGATLGSRSAEKCSEPIFPTEAKLPSIRPAYSAMDLEHYGDAGFHRNYSQLSQIKASSRYCGIRLGELVVTRVPESFPGVKITDLGRYRITEITHTVDSRGRYSNTFCGVPGGTPVMPWGDAVMPVAYPEMARVLSNDDPKNQGRVKVQFMWQEIDGGESYWMRVQSPDAGKSEQVAKNRGFVFIPEPGDLVMVGFEQGNPDRPYVTGSLFYKANSEGAGTDNSVKSIRTRSGHTLEFNDDEGGNWGITIKDGNGCILHLDTKGKNIEITAPETLSLTAKNVSINAEENVQIAAKQNIDVTAEADINIAAKGYLMQQTDGDLSVSAKGSINAEAKTDVSLSGQNTTVDGKTKVTVSGAETLVSGKMTTVQGAAHKIDVM


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9925 - -


  Protein sequence: 617 a.a.    

>T6CP011065 NC_006347:c2288745-2286895 [Bacteroides fragilis YCH46] [TssI]
MASTNLDAVSVEIKVAGKVCDYVTMELFQSVSTHHRFKIKVNYRPDKPSVWAIGPDVIFKQLGEKVSIIMTHHESGEKTE
FHGLISDIHVEGFDGNQGFVILEGGSPTILLDRDPAMDCYVEQNLNTIVSDILDKSGVKMNVTNNPKHTDIIPYVARYKE
TSYGFLSRLLRSYGEWFYYNGETLQIGDPEIETESRAGYDVDLTGVSINATIRSLNHSTYEFDPVNDKFYYDYSGTPKGA
TLGSRSAEKCSEPIFPTEAKLPSIRPAYSAMDLEHYGDAGFHRNYSQLSQIKASSRYCGIRLGELVVTRVPESFPGVKIT
DLGRYRITEITHTVDSRGRYSNTFCGVPGGTPVMPWGDAVMPVAYPEMARVLSNDDPKNQGRVKVQFMWQEIDGGESYWM
RVQSPDAGKSEQVAKNRGFVFIPEPGDLVMVGFEQGNPDRPYVTGSLFYKANSEGAGTDNSVKSIRTRSGHTLEFNDDEG
GNWGITIKDGNGCILHLDTKGKNIEITAPETLSLTAKNVSINAEENVQIAAKQNIDVTAEADINIAAKGYLMQQTDGDLS
VSAKGSINAEAKTDVSLSGQNTTVDGKTKVTVSGAETLVSGKMTTVQGAAHKIDVM*

  Nucleotide sequence: 1851 bp    

>T6CP011065 NC_006347:c2288745-2286895 [Bacteroides fragilis YCH46] [TssI]
ATGGCATCGACAAACTTGGACGCTGTAAGCGTGGAGATAAAAGTAGCAGGAAAAGTCTGTGATTATGTAACAATGGAACT
TTTTCAGTCGGTCAGTACACACCACCGTTTCAAAATCAAAGTAAACTATCGTCCGGACAAGCCAAGTGTCTGGGCTATCG
GTCCCGATGTGATATTCAAGCAACTGGGTGAGAAGGTATCCATCATCATGACCCACCATGAGAGTGGAGAGAAAACGGAA
TTTCACGGACTGATTTCTGATATTCATGTGGAAGGCTTTGACGGTAATCAGGGATTTGTCATACTGGAAGGGGGAAGCCC
TACCATCCTGCTGGACAGAGACCCCGCTATGGACTGCTATGTAGAGCAAAACCTGAATACGATAGTCAGTGACATACTTG
ATAAGAGCGGGGTGAAAATGAATGTGACCAACAATCCCAAACATACGGACATCATCCCTTATGTTGCCCGCTATAAAGAG
ACAAGCTACGGATTCCTATCCCGTCTGCTGCGCTCCTACGGCGAGTGGTTCTATTACAACGGAGAAACGCTACAGATAGG
AGACCCTGAAATAGAGACGGAAAGCCGTGCAGGGTATGATGTAGATCTGACGGGAGTCAGCATCAATGCCACTATCCGTT
CGTTGAATCACAGCACCTATGAGTTCGACCCCGTCAATGATAAGTTCTATTACGACTACAGCGGAACACCTAAGGGTGCT
ACCCTTGGTTCCCGTTCGGCTGAGAAATGCAGTGAACCTATCTTCCCAACCGAGGCAAAATTACCCTCGATAAGACCTGC
GTATAGCGCAATGGATTTGGAACACTACGGGGATGCCGGATTTCACCGAAACTATTCCCAATTGTCTCAAATCAAGGCTT
CAAGCCGTTACTGTGGCATACGACTGGGAGAATTAGTGGTTACCCGTGTACCTGAAAGTTTCCCGGGAGTTAAGATTACC
GATTTGGGACGTTACCGTATTACTGAGATTACCCATACGGTAGATAGTCGGGGACGGTATAGCAACACTTTCTGCGGTGT
ACCGGGTGGTACGCCCGTCATGCCGTGGGGAGATGCCGTGATGCCGGTAGCCTATCCGGAGATGGCAAGAGTGTTGAGCA
ATGACGACCCCAAGAATCAGGGGCGTGTCAAAGTACAGTTCATGTGGCAGGAGATAGACGGCGGCGAGAGCTACTGGATG
CGGGTGCAAAGCCCGGATGCAGGCAAGAGCGAGCAAGTAGCCAAGAACCGTGGTTTTGTGTTTATTCCCGAACCGGGTGA
TTTGGTGATGGTAGGTTTTGAGCAAGGCAATCCAGACCGTCCGTATGTGACAGGAAGCCTTTTCTATAAGGCTAATTCAG
AGGGAGCGGGAACGGACAACAGTGTAAAGAGTATCCGTACACGCAGCGGACATACGTTAGAGTTCAATGATGATGAGGGT
GGTAACTGGGGCATTACGATTAAGGATGGTAACGGTTGTATACTCCATTTAGACACTAAAGGAAAAAATATTGAAATCAC
TGCCCCGGAAACCCTGTCTTTGACAGCAAAGAACGTTAGCATCAATGCTGAAGAAAATGTTCAGATTGCAGCTAAACAGA
ATATAGATGTAACCGCCGAAGCCGATATAAATATTGCGGCCAAAGGCTATTTGATGCAGCAGACAGACGGTGACCTGTCA
GTTTCCGCAAAAGGAAGCATAAATGCCGAAGCGAAAACCGATGTCAGTCTCTCGGGTCAAAATACAACGGTAGACGGTAA
GACCAAAGTGACAGTAAGCGGTGCAGAAACATTAGTATCAGGCAAGATGACAACTGTGCAGGGAGCTGCCCACAAAATAG
ATGTAATGTAA