Detailed information of component protein
Summary
| Component ID | T6CP011068 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS00908  (Type iii) |
| Strain | Bacteroides fragilis YCH46 |
| Replicon | chromosome |
| Sequence | Protein sequence (140 a.a.); Nucleotide sequence (420 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | BF_RS09180 |
| Coordinate (Strand) | 2291519..2291938 (-) |
| NCBI ID | WP_009292156.1 |
| RefSeq | NC_006347 |
| Uniprot ID | A0A015VXZ7_BACFG, Q5LDU0_BACFN, Q64UY3_BACFR, A0A149NBK2_BACFG |
| KEGG ID | bfb:VU15_08370, bfr:BF1948, bfs:BF9343_1934 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| TssD | PF17642.3 | 2.4e-07 | 58..136 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-139 | MGFFDRLFKGKEVFADRRNPDMVCEITLCGQSHILSEFDIAYEPDNSSKEYMEAYAVFSEPVNAEVENWIMRADRKENGTVRFYLNSDAMDEGALFEINFSNASCVHYHNVSQGDTSVKTIVMTFPSVRMGGDEFELKR |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9869 | - | - |
Protein sequence: 140 a.a.
>T6CP011068 NC_006347:c2291938-2291519 [Bacteroides fragilis YCH46] [TssD]
MGFFDRLFKGKEVFADRRNPDMVCEITLCGQSHILSEFDIAYEPDNSSKEYMEAYAVFSEPVNAEVENWIMRADRKENGT
VRFYLNSDAMDEGALFEINFSNASCVHYHNVSQGDTSVKTIVMTFPSVRMGGDEFELKR*
MGFFDRLFKGKEVFADRRNPDMVCEITLCGQSHILSEFDIAYEPDNSSKEYMEAYAVFSEPVNAEVENWIMRADRKENGT
VRFYLNSDAMDEGALFEINFSNASCVHYHNVSQGDTSVKTIVMTFPSVRMGGDEFELKR*
Nucleotide sequence: 420 bp
>T6CP011068 NC_006347:c2291938-2291519 [Bacteroides fragilis YCH46] [TssD]
ATGGGCTTTTTCGACAGGCTGTTTAAAGGAAAAGAAGTGTTTGCGGATAGACGCAATCCGGATATGGTATGCGAGATAAC
GCTTTGCGGGCAGTCGCACATCTTGTCCGAGTTTGATATTGCCTATGAGCCGGATAATTCCTCGAAAGAATATATGGAAG
CATACGCCGTATTTTCAGAGCCGGTGAATGCGGAGGTAGAAAACTGGATAATGAGAGCGGACAGGAAAGAAAACGGGACA
GTCCGATTCTATCTCAACAGCGATGCTATGGACGAAGGTGCACTGTTCGAGATAAATTTCAGTAATGCGAGCTGCGTGCA
TTATCACAATGTATCGCAGGGAGACACATCGGTAAAGACCATTGTGATGACTTTTCCGTCTGTCCGGATGGGAGGTGATG
AATTTGAACTAAAACGATAA
ATGGGCTTTTTCGACAGGCTGTTTAAAGGAAAAGAAGTGTTTGCGGATAGACGCAATCCGGATATGGTATGCGAGATAAC
GCTTTGCGGGCAGTCGCACATCTTGTCCGAGTTTGATATTGCCTATGAGCCGGATAATTCCTCGAAAGAATATATGGAAG
CATACGCCGTATTTTCAGAGCCGGTGAATGCGGAGGTAGAAAACTGGATAATGAGAGCGGACAGGAAAGAAAACGGGACA
GTCCGATTCTATCTCAACAGCGATGCTATGGACGAAGGTGCACTGTTCGAGATAAATTTCAGTAATGCGAGCTGCGTGCA
TTATCACAATGTATCGCAGGGAGACACATCGGTAAAGACCATTGTGATGACTTTTCCGTCTGTCCGGATGGGAGGTGATG
AATTTGAACTAAAACGATAA