Detailed information of component protein


Summary

Component ID T6CP011069
Component protein type TssD
T6SS ID (Type) T6SS00908 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (136 a.a.); Nucleotide sequence (408 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) BF_RS09185
Coordinate (Strand) 2291941..2292348 (-)
NCBI ID WP_008659770.1
RefSeq NC_006347
Uniprot ID Q64UY2_BACFR
KEGG ID bfr:BF1949
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssD PF17642.3 4.2e-20 21..129

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-135 MQTHLYLHKENTDLPHDEYRGKYPLKHFDYGLSRNVGRKGEITSGVCGGEIRIVIDGFADATLLGWLFDTFRKEDGAIVTLDEHETTFAKLQFSGASVRSYRMNYDSRVKKGVVTIIVIEAKEIVTDNDLFFKNK



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9896 - -



  Protein sequence: 136 a.a.    

>T6CP011069 NC_006347:c2292348-2291941 [Bacteroides fragilis YCH46] [TssD]
MQTHLYLHKENTDLPHDEYRGKYPLKHFDYGLSRNVGRKGEITSGVCGGEIRIVIDGFADATLLGWLFDTFRKEDGAIVT
LDEHETTFAKLQFSGASVRSYRMNYDSRVKKGVVTIIVIEAKEIVTDNDLFFKNK*

  Nucleotide sequence: 408 bp    

>T6CP011069 NC_006347:c2292348-2291941 [Bacteroides fragilis YCH46] [TssD]
ATGCAAACGCACCTGTACCTTCATAAAGAGAACACCGACCTACCCCACGACGAGTACCGGGGGAAGTATCCGCTGAAACA
CTTTGATTACGGATTGAGCCGTAATGTGGGGCGTAAAGGTGAAATCACTTCCGGCGTATGCGGCGGAGAAATACGAATCG
TCATTGATGGATTTGCTGACGCTACCCTGCTGGGATGGCTCTTTGACACCTTCCGTAAAGAAGATGGAGCGATTGTTACA
CTGGATGAACACGAAACGACCTTTGCCAAACTGCAATTTTCGGGCGCATCGGTAAGGAGCTATCGTATGAACTACGATTC
GCGGGTTAAAAAAGGTGTGGTGACTATCATTGTGATAGAAGCCAAAGAGATTGTAACGGACAATGACTTATTTTTTAAAA
ACAAATAA