Detailed information of component protein


Summary

Component ID T6CP011064
Component protein type TssN
T6SS ID (Type) T6SS00908 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (283 a.a.); Nucleotide sequence (849 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS09140
Coordinate (Strand) 2281286..2282134 (-)
NCBI ID WP_011202654.1
RefSeq NC_006347
Uniprot ID Q64UZ1_BACFR
KEGG ID bfr:BF1940
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
TssN PF17555.4 8.7e-95 10..276
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-9 MDSFFQTLA
Transmembrane helix 10-29 FTYLLYPILGLLLVGLGIFI
Inside 30-40 AKKNALLNNKR
Transmembrane helix 41-63 LVGYTIGAIAILTLPALLGFLDY
Outside 64-67 GFMP
Transmembrane helix 68-90 YGYIFLAMLYLLLGSYNIRMIAW
Inside 91-101 VFKDDYKYRHE
Transmembrane helix 102-119 IILTSFILVVSMLFFTLV
Outside 120-128 FNLCNELKY
Transmembrane helix 129-146 GLWASTCLLPFVIVSVFI
Inside 147-282 RTYRIFIAIPIPVYEVWRYTDDTEQEGYFDPGSLQVLQIELYKQESDREPVKLSVKAPDEMQFGTWFHRMIDDYNLKSPQAPIDDYAAKEGGWIFYRKPTLLSPRHYIDFNLTVKDNRIRSRDVIVAKRVMEQSEN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9985 - -


  Protein sequence: 283 a.a.    

>T6CP011064 NC_006347:c2282134-2281286 [Bacteroides fragilis YCH46] [TssN]
MDSFFQTLAFTYLLYPILGLLLVGLGIFIAKKNALLNNKRLVGYTIGAIAILTLPALLGFLDYGFMPYGYIFLAMLYLLL
GSYNIRMIAWVFKDDYKYRHEIILTSFILVVSMLFFTLVFNLCNELKYGLWASTCLLPFVIVSVFIRTYRIFIAIPIPVY
EVWRYTDDTEQEGYFDPGSLQVLQIELYKQESDREPVKLSVKAPDEMQFGTWFHRMIDDYNLKSPQAPIDDYAAKEGGWI
FYRKPTLLSPRHYIDFNLTVKDNRIRSRDVIVAKRVMEQSEN*

  Nucleotide sequence: 849 bp    

>T6CP011064 NC_006347:c2282134-2281286 [Bacteroides fragilis YCH46] [TssN]
ATGGACTCTTTTTTCCAGACCCTCGCCTTCACATATCTGCTCTACCCGATATTGGGATTGTTACTGGTAGGCTTAGGCAT
TTTCATAGCCAAGAAAAACGCTCTGCTGAACAACAAGCGGCTGGTAGGCTACACTATCGGTGCAATTGCCATCCTGACGC
TCCCTGCTTTGTTGGGATTCCTTGATTACGGTTTCATGCCCTACGGCTACATCTTCCTTGCCATGCTGTATCTCCTTCTG
GGCAGTTATAACATACGAATGATTGCGTGGGTTTTTAAGGACGACTACAAGTACCGCCACGAAATCATACTCACCAGTTT
TATACTGGTGGTATCCATGTTGTTCTTCACCCTTGTCTTCAATCTCTGCAATGAATTGAAATACGGTCTGTGGGCATCCA
CCTGCCTGCTTCCATTCGTCATTGTCTCGGTATTTATCCGCACCTACCGTATCTTTATCGCCATTCCGATTCCCGTGTAT
GAAGTATGGAGATACACAGACGATACCGAGCAGGAGGGATATTTTGACCCGGGCAGCCTGCAAGTTCTGCAAATAGAGCT
ATACAAGCAAGAAAGCGACCGGGAACCGGTCAAACTCAGTGTGAAAGCACCGGACGAAATGCAATTTGGCACATGGTTCC
ACCGGATGATTGACGACTATAATCTGAAATCTCCGCAAGCCCCGATAGACGACTATGCAGCAAAAGAGGGAGGATGGATT
TTCTACCGGAAACCCACCTTGCTATCTCCCCGGCATTACATAGACTTCAACCTTACCGTAAAGGACAACCGCATCCGCAG
CCGTGATGTAATTGTCGCTAAACGGGTGATGGAACAGAGTGAGAATTAA