Detailed information of component protein


Summary

Component ID T6CP011066
Component protein type TssF
T6SS ID (Type) T6SS00908 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (606 a.a.); Nucleotide sequence (1818 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS09165
Coordinate (Strand) 2288771..2290588 (-)
NCBI ID WP_005787081.1
RefSeq NC_006347
Uniprot ID Q64UY6_BACFR
KEGG ID bfr:BF1945
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-605 MANLFTKESIKARMFKQAATLYDIRNIDGIDPLIRLLIEALSGEIFKLSGDMHAIESRLLEKVASALTPHTALVAKPAHAIAAARPYTPQATVSPTDLFSYKSTEIVKKYKMKNLFFTPLHETRIINAELKFLVTADEFCTITPEGERDATARFRSDVPVMGRKISIGMKIGNNVTTLNDLPLYIDIPLVADKSSYLKLLPYCHCTIAGIPVEIKGGIEYAPTRSVSEKYDLGRLITEEITSKYASHYLTLKAHGLKVRDLSRSRVPEEISFLLPSDFIAECDADTVWIDIEFPTAFSKEILEQIKVQMNTFIVVNKYPAKITRKVDSVSAILPLEKTEFEYFLFVDSITDNHGDRLREISGTQDEGRAGCYSVRRGGCERFNAMDAKDFLNRLTDLLYDESMAFSSTDKDGMKEVIEQIEERVSQLGDKNKDGVGGQEMLSYVVIDQRYDKDTRLTVDYTLTNGEFANDIYAGEPLNDCANPDIDKDTLRFVTSAHGGEPSPSVKRRMDMYRFMLLSHGSIYTKEDIRNFCMARYGDSIRSVEVKLGYAAGKKESEGFIRTLDVYLRLSEGMQGLDRDEFVVDLDSELRRLSPETYNYRVFINS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9970 - -


  Protein sequence: 606 a.a.    

>T6CP011066 NC_006347:c2290588-2288771 [Bacteroides fragilis YCH46] [TssF]
MANLFTKESIKARMFKQAATLYDIRNIDGIDPLIRLLIEALSGEIFKLSGDMHAIESRLLEKVASALTPHTALVAKPAHA
IAAARPYTPQATVSPTDLFSYKSTEIVKKYKMKNLFFTPLHETRIINAELKFLVTADEFCTITPEGERDATARFRSDVPV
MGRKISIGMKIGNNVTTLNDLPLYIDIPLVADKSSYLKLLPYCHCTIAGIPVEIKGGIEYAPTRSVSEKYDLGRLITEEI
TSKYASHYLTLKAHGLKVRDLSRSRVPEEISFLLPSDFIAECDADTVWIDIEFPTAFSKEILEQIKVQMNTFIVVNKYPA
KITRKVDSVSAILPLEKTEFEYFLFVDSITDNHGDRLREISGTQDEGRAGCYSVRRGGCERFNAMDAKDFLNRLTDLLYD
ESMAFSSTDKDGMKEVIEQIEERVSQLGDKNKDGVGGQEMLSYVVIDQRYDKDTRLTVDYTLTNGEFANDIYAGEPLNDC
ANPDIDKDTLRFVTSAHGGEPSPSVKRRMDMYRFMLLSHGSIYTKEDIRNFCMARYGDSIRSVEVKLGYAAGKKESEGFI
RTLDVYLRLSEGMQGLDRDEFVVDLDSELRRLSPETYNYRVFINS*

  Nucleotide sequence: 1818 bp    

>T6CP011066 NC_006347:c2290588-2288771 [Bacteroides fragilis YCH46] [TssF]
ATGGCAAATCTATTCACAAAAGAAAGCATTAAAGCCCGGATGTTCAAACAGGCGGCAACCCTATATGACATACGAAATAT
AGATGGCATAGACCCCCTTATCCGACTGCTGATTGAAGCCTTGTCGGGCGAAATTTTCAAGCTGTCCGGTGATATGCACG
CCATTGAAAGCCGATTGTTGGAGAAAGTCGCTTCCGCCCTTACTCCACACACGGCATTGGTTGCCAAACCCGCCCATGCT
ATTGCTGCTGCCCGACCATATACACCGCAAGCTACTGTATCTCCCACAGACCTGTTTTCTTATAAAAGCACGGAGATAGT
GAAGAAGTATAAGATGAAAAATCTCTTCTTTACTCCGCTGCATGAAACCCGCATAATCAATGCCGAACTGAAGTTTCTCG
TGACGGCGGATGAATTTTGCACAATCACTCCCGAAGGAGAACGTGACGCCACTGCCCGCTTTCGTTCCGATGTGCCGGTA
ATGGGTCGGAAAATCAGTATCGGGATGAAAATAGGCAACAATGTAACTACCCTCAACGACTTGCCGTTATATATAGATAT
ACCGCTTGTAGCAGATAAAAGCAGTTATCTGAAATTACTGCCGTACTGCCATTGCACGATTGCCGGTATTCCTGTAGAAA
TTAAAGGGGGAATCGAGTACGCCCCCACACGTTCGGTCAGTGAGAAATACGATCTTGGCAGGTTGATTACGGAAGAAATA
ACCAGCAAATATGCTTCCCATTACCTGACATTGAAAGCTCACGGATTAAAAGTCAGAGATTTGTCACGTAGCAGAGTGCC
CGAAGAAATCTCTTTCCTGCTGCCAAGTGATTTCATTGCTGAATGTGATGCGGATACTGTTTGGATAGATATAGAATTTC
CCACCGCTTTTTCAAAAGAAATACTGGAACAGATAAAGGTGCAGATGAACACTTTTATCGTAGTAAACAAATATCCGGCA
AAGATTACCAGAAAGGTAGATTCCGTCTCGGCCATTCTCCCTTTGGAAAAGACGGAATTTGAATATTTCCTGTTTGTGGA
TTCGATTACCGATAACCACGGAGACCGGCTTAGGGAAATTTCCGGCACACAGGATGAAGGTAGGGCCGGCTGTTATTCGG
TCAGAAGGGGCGGTTGCGAACGCTTCAATGCGATGGATGCCAAAGATTTTCTGAACCGCCTGACAGACCTGCTATATGAC
GAAAGCATGGCCTTCTCTTCGACAGACAAAGACGGAATGAAAGAGGTAATCGAGCAGATAGAAGAACGGGTAAGCCAATT
GGGAGATAAAAATAAAGACGGAGTCGGAGGACAGGAAATGTTGTCGTATGTAGTCATAGACCAACGTTATGACAAGGATA
CCCGGTTAACTGTGGATTATACTCTTACTAATGGCGAATTTGCCAATGACATCTATGCGGGAGAGCCATTAAATGACTGT
GCTAATCCCGATATAGACAAAGATACACTGCGGTTTGTCACTTCCGCCCATGGAGGAGAGCCCTCCCCATCCGTAAAGCG
CCGGATGGATATGTACCGATTCATGCTGTTGTCACACGGCAGTATATACACGAAAGAGGATATACGCAATTTCTGCATGG
CAAGGTATGGCGACAGCATCCGCTCTGTGGAGGTAAAGCTGGGGTATGCAGCCGGTAAAAAAGAAAGCGAAGGTTTCATA
AGGACGCTGGACGTGTATCTACGGCTATCGGAGGGGATGCAAGGATTAGACCGGGACGAATTCGTCGTTGATTTGGACAG
TGAGCTCAGGCGGTTGTCTCCGGAAACCTATAACTACCGTGTTTTTATTAACTCATAG