Detailed information of component protein


Summary

Component ID T6CP011062
Component protein type TssG
T6SS ID (Type) T6SS00908 experimental (Type iii)
Strain Bacteroides fragilis YCH46
Replicon chromosome
Sequence Protein sequence (319 a.a.); Nucleotide sequence (957 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) BF_RS09130
Coordinate (Strand) 2279158..2280114 (-)
NCBI ID WP_005787052.1
RefSeq NC_006347
Uniprot ID A0A015TVP4_BACFG, A0A016APV3_BACFG, A0A016HZ59_BACFG, Q64UZ3_BACFR, A0A1C0WS19_BACFG
KEGG ID bfb:VU15_08285, bfr:BF1938
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 2.1e-10 181..318
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-318 MEHRLPKEIKGLLPPNTMDTDFKAELYGALLAEAGFDTAQIMMVRDGNNLSNVSKDIRSVKYRNHVGIAEGTYIELKTNRRGIYDSLPEGLFHEALFPGKVKDLGLILEEMQQHSNEEFFIRRFFSLLESEVDREGIQAQLLELRYDKKNKYSDYAKLFAACWPVIHILSGQGALLFIKFMPHIHSIRGRLEEVSDALSQILEAPVKVRPKMVQRTIRAQKPNRLGNMRLGANSVNVGVLNSAEADLHIHISDLPTREVERFLPGNRSRKALEMLADIFLGAWQEFDVTVSVSPDERKTYLKPTGDASPCYLGINTYL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9917 - -


  Protein sequence: 319 a.a.    

>T6CP011062 NC_006347:c2280114-2279158 [Bacteroides fragilis YCH46] [TssG]
MEHRLPKEIKGLLPPNTMDTDFKAELYGALLAEAGFDTAQIMMVRDGNNLSNVSKDIRSVKYRNHVGIAEGTYIELKTNR
RGIYDSLPEGLFHEALFPGKVKDLGLILEEMQQHSNEEFFIRRFFSLLESEVDREGIQAQLLELRYDKKNKYSDYAKLFA
ACWPVIHILSGQGALLFIKFMPHIHSIRGRLEEVSDALSQILEAPVKVRPKMVQRTIRAQKPNRLGNMRLGANSVNVGVL
NSAEADLHIHISDLPTREVERFLPGNRSRKALEMLADIFLGAWQEFDVTVSVSPDERKTYLKPTGDASPCYLGINTYL*

  Nucleotide sequence: 957 bp    

>T6CP011062 NC_006347:c2280114-2279158 [Bacteroides fragilis YCH46] [TssG]
ATGGAACATCGCTTACCCAAAGAGATAAAGGGGCTTCTTCCGCCCAATACAATGGACACCGACTTCAAGGCAGAGCTATA
CGGAGCCTTGCTAGCGGAAGCCGGGTTCGACACCGCTCAAATTATGATGGTGCGTGACGGTAATAACCTGAGCAATGTTT
CGAAAGATATCCGATCGGTGAAGTACAGAAATCATGTCGGCATAGCGGAGGGGACATACATAGAACTAAAGACCAACCGC
CGGGGGATTTATGATTCGCTGCCGGAGGGATTGTTCCATGAGGCGCTCTTTCCCGGCAAGGTGAAAGATTTGGGACTTAT
TCTGGAAGAGATGCAACAACATAGTAACGAAGAGTTCTTTATCCGCCGTTTTTTCAGCCTGCTGGAGAGCGAAGTGGACA
GAGAAGGGATACAGGCACAATTGCTCGAATTGCGGTACGATAAAAAGAACAAATATTCTGATTATGCGAAACTCTTTGCC
GCTTGCTGGCCGGTCATTCATATTTTGTCCGGACAGGGGGCGTTGCTGTTCATCAAGTTCATGCCGCATATCCATTCGAT
CCGGGGCAGACTGGAAGAGGTAAGCGACGCACTGTCGCAGATTCTGGAAGCTCCAGTAAAGGTACGCCCGAAAATGGTGC
AACGGACAATAAGGGCGCAAAAACCGAACCGGTTGGGGAACATGAGACTGGGAGCAAACAGTGTGAATGTGGGGGTGCTT
AATAGTGCGGAAGCTGATTTGCATATACACATAAGCGACCTGCCAACACGGGAAGTCGAAAGGTTCCTGCCCGGCAACCG
CTCCCGCAAAGCTCTTGAAATGCTGGCGGATATTTTTCTTGGCGCGTGGCAGGAGTTCGATGTGACGGTCAGCGTTAGCC
CTGACGAACGCAAGACTTATTTAAAACCGACGGGTGACGCCAGTCCGTGTTACCTCGGGATAAACACTTATTTATAA