Detailed information of T6SS
Note: only experimentally validated proteins are displayed in the graph.
Summary
| T6SS ID | T6SS00802  |
| T6SS type | Type Unknown |
| Strain | Vibrio anguillarum NB10 |
| Replicon (GenBank) | chromosome (GQ118992) |
| Location | 1..11619 |
| Function | effector translocation |
| Comment | Type VI secretion modulates quorum sensing and stress response in Vibrio anguillarum. |
| References | [1] Weber B et al (2009) Type VI secretion modulates quorum sensing and stress response in Vibrio anguillarum. Environ Microbiol. 11(12):3018-28. [PudMed:19624706] [2] Weber B et al (2011) The phosphotransferase VanU represses expression of four qrr genes antagonizing VanO-mediated quorum-sensing regulation in Vibrio anguillarum. Microbiology. 157(Pt 12):3324-39. [PudMed:21948044] |
Experimental investigation has been performed.T6SS components and genome coordinates
| Component | FHA | TssH | TssJ | TssK | TssL |
| Number | 1 | 1 | 1 | 1 | 1 |
| Component ID | Component | Locus tag (Gene) | Coordinate | Strand | Size (bp) | NCBI ID | Product |
|---|---|---|---|---|---|---|---|
| T6CP010952 | TssH | Locus_01 (clpV) | 1..591 | + | 591 | pseudogene | ClpV |
| Locus_02 (vtsA) | 734..1888 | + | 1155 | pseudogene | VtsA | ||
| Locus_03 (vtsB) | 1898..4093 | + | 2196 | pseudogene | VtsB | ||
| Locus_04 (vtsC) | 4090..5223 | + | 1134 | pseudogene | VtsC | ||
| Locus_05 (vtsD) | 5226..5921 | + | 696 | pseudogene | VtsD | ||
| T6CP012287 | FHA | Locus_06 (vtsE) | 5955..6902 | + | 948 | pseudogene | VtsE |
| T6CP010953 | TssJ | Locus_07 (vtsF) | 6902..7369 | + | 468 | pseudogene | VtsF |
| T6CP010954 | TssK | Locus_08 (vtsG) | 7369..8685 | + | 1317 | pseudogene | VtsG |
| T6CP010955 | TssL | Locus_09 (vtsH) | 8693..9835 | + | 1143 | pseudogene | VtsH |
| Locus_10 (vtsI) | 9837..11619 | + | 1783 | pseudogene | VtsI |
Genes in the 5-Kb flanking regions if available, or non-core components encoded by the T6SS gene cluster if any.
Download FASTA format files
Note: in the 'Target' column, ↓ means the target is positively regulated by the regulator, while ↑ indicates negatively regulation.
Experimental investigation has been performed.
Bioinformatics investigation has been performed.| Regulator ID | Locus tag (Gene) | Regulator type | Regulatory pathway | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Target (Regulation) |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Effector ID | Locus tag (Gene) | Classification | Cognate immunity protein | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed. Bioinformatics investigation has been performed.| Immunity protein ID | Locus tag (Gene) | Cognate effector | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID |
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Experimental investigation has been performed.| Accessory protein ID | Locus tag (Gene) | Type | Organism | Replicon (Accession) | Coordinates (Strand) | NCBI ID | Related structure protein | Related effector |
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