Detailed information of component protein


Summary

Component ID T6CP010952
Component protein type TssH
T6SS ID (Type) T6SS00802 experimental (Type Unknown)
Strain Vibrio anguillarum NB10
Replicon chromosome
Sequence Protein sequence (197 a.a.); Nucleotide sequence (591 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 1..591 (+)
NCBI ID -
GenBank GQ118992
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 3.6e-21 7..95
ClpB_D2-small PF10431.11 7.8e-13 101..175
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-196 RKNPYSVLLLDEMEKAHPSVHDIFYQIFDKGSISDSEGRHIDFRNTIIIMTSNAADSAVVNACENSRPDVPTLTQSIFPELQKHFKPAFLGRATIVPYFPLNDEEMAQIATLSLNRIRKRVQSHYKASFEFHPDVIDLLVNMNDSPETGARAVEQLINRQLMPDLANQCIVRMSENKPVEVVTVHVEEGKFKIQIQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9795 - -


  Protein sequence: 197 a.a.    

>T6CP010952 GQ118992:1-591 [Vibrio anguillarum] [TssH]
RKNPYSVLLLDEMEKAHPSVHDIFYQIFDKGSISDSEGRHIDFRNTIIIMTSNAADSAVVNACENSRPDVPTLTQSIFPE
LQKHFKPAFLGRATIVPYFPLNDEEMAQIATLSLNRIRKRVQSHYKASFEFHPDVIDLLVNMNDSPETGARAVEQLINRQ
LMPDLANQCIVRMSENKPVEVVTVHVEEGKFKIQIQ*

  Nucleotide sequence: 591 bp    

>T6CP010952 GQ118992:1-591 [Vibrio anguillarum] [TssH]
CGTAAGAACCCATATTCTGTACTGCTGCTGGATGAAATGGAAAAAGCCCACCCTAGTGTGCACGATATCTTCTATCAAAT
CTTTGATAAAGGCTCGATCTCGGACAGTGAAGGTCGACACATCGATTTTCGTAATACGATCATCATCATGACATCAAACG
CGGCAGACAGCGCTGTTGTTAATGCATGTGAAAATAGTCGACCGGATGTTCCGACGCTGACTCAGTCTATTTTCCCTGAG
CTGCAAAAACACTTTAAACCAGCATTTCTTGGCCGTGCGACCATCGTGCCTTACTTCCCTTTGAACGATGAAGAAATGGC
GCAAATTGCAACCTTGTCTCTGAACCGCATTCGCAAGCGCGTTCAATCCCACTACAAAGCAAGTTTCGAATTTCACCCTG
ATGTGATTGATCTGCTGGTCAATATGAATGATTCACCAGAAACAGGAGCTCGTGCCGTTGAGCAACTGATCAATCGTCAA
CTTATGCCGGATTTAGCGAATCAGTGCATTGTCCGCATGAGCGAGAACAAGCCAGTAGAAGTGGTCACTGTTCACGTTGA
AGAAGGCAAATTTAAGATTCAGATTCAATAG