Detailed information of component protein


Summary

Component ID T6CP012287
Component protein type FHA
T6SS ID (Type) T6SS00802 experimental (Type Unknown)
Strain Vibrio anguillarum NB10
Replicon chromosome
Sequence Protein sequence (316 a.a.); Nucleotide sequence (948 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) -
Coordinate (Strand) 5955..6902 (+)
NCBI ID -
GenBank GQ118992
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
FHA PF00498.28 8.6e-12 29..97

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-315 MPLSIRIISSPDGESIAQWNQAFPDDGGDIGRAFGATLQLNDASREISSTHAMIRKTSRGYQIMDNSTNGLYINGSDVPLGKGNQSTLSDGDVLDIGRYRLLVSCFFPETAKAQIQQPHSDSCRLGDDPFSTESTPFIQSIPEVDEAPGFTISTTDVVGDDPFASDASVKQELAPHFNLDFQTAEDDPLKDSDFRTSFPNHEVMATSSFAQEESPLNHSQFAITEFKNHGQRLQERTDKALEMALARLLSDISPNAMESMFDDLSGNGFWSRKPKYWDMYKRYFNRQVENRDWQIKFQAYFRDAMRMQKNFEGDQ



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9785 - -



  Protein sequence: 316 a.a.    

>T6CP012287 GQ118992:5955-6902 [Vibrio anguillarum] [FHA]
MPLSIRIISSPDGESIAQWNQAFPDDGGDIGRAFGATLQLNDASREISSTHAMIRKTSRGYQIMDNSTNGLYINGSDVPL
GKGNQSTLSDGDVLDIGRYRLLVSCFFPETAKAQIQQPHSDSCRLGDDPFSTESTPFIQSIPEVDEAPGFTISTTDVVGD
DPFASDASVKQELAPHFNLDFQTAEDDPLKDSDFRTSFPNHEVMATSSFAQEESPLNHSQFAITEFKNHGQRLQERTDKA
LEMALARLLSDISPNAMESMFDDLSGNGFWSRKPKYWDMYKRYFNRQVENRDWQIKFQAYFRDAMRMQKNFEGDQ*

  Nucleotide sequence: 948 bp    

>T6CP012287 GQ118992:5955-6902 [Vibrio anguillarum] [FHA]
ATGCCTCTATCGATTAGAATTATTAGCTCTCCAGATGGTGAAAGCATCGCCCAATGGAATCAAGCATTTCCAGACGATGG
CGGAGATATCGGGCGTGCGTTTGGCGCGACGCTACAACTTAATGACGCAAGTCGTGAGATTTCAAGTACCCATGCAATGA
TTCGTAAGACCTCGCGTGGATACCAAATCATGGACAACAGCACCAATGGCCTTTACATCAATGGATCTGATGTGCCTTTG
GGCAAGGGTAACCAATCTACACTAAGTGATGGTGATGTTCTTGATATTGGCCGCTACCGATTGCTGGTTTCTTGTTTCTT
CCCTGAAACAGCGAAAGCGCAAATCCAGCAGCCTCACTCAGATAGTTGTCGATTAGGTGATGATCCGTTTAGTACTGAAT
CAACACCTTTTATTCAAAGTATTCCTGAAGTAGATGAAGCGCCTGGGTTCACCATCTCGACGACAGATGTGGTGGGGGAT
GACCCATTTGCGAGTGATGCCTCAGTTAAGCAAGAACTAGCGCCTCACTTTAATCTTGATTTTCAGACGGCTGAGGATGA
CCCACTGAAAGACAGTGATTTTCGTACGTCATTTCCAAACCATGAAGTGATGGCGACCTCCTCTTTCGCTCAAGAAGAGT
CACCACTGAACCACTCTCAGTTTGCTATCACTGAGTTTAAGAATCATGGGCAGCGCTTACAGGAACGTACGGACAAAGCA
TTAGAGATGGCATTGGCAAGGTTGTTGTCTGACATTTCACCGAATGCGATGGAGTCGATGTTTGATGATTTGTCGGGCAA
CGGTTTTTGGTCTCGTAAACCGAAGTACTGGGATATGTACAAACGCTATTTCAACCGACAAGTAGAGAATCGCGATTGGC
AAATTAAGTTTCAAGCGTACTTCAGAGATGCAATGCGTATGCAAAAAAACTTCGAAGGGGATCAGTAA