Detailed information of component protein


Summary

Component ID T6CP010954
Component protein type TssK
T6SS ID (Type) T6SS00802 experimental (Type Unknown)
Strain Vibrio anguillarum NB10
Replicon chromosome
Sequence Protein sequence (439 a.a.); Nucleotide sequence (1317 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 7369..8685 (+)
NCBI ID -
GenBank GQ118992
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 6.6e-98 18..437
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-438 MDNNKVVWSEGMFLSPQHFQQQERYVEHFTREFAGQISPNAYGFTSLELDRSMLNIGKVSVRRAKGIFPDGTPFEIEQALVLDVPKNTSHKKVYLALPVSRPGTIDVGEDARLRHSSQEHPVYDTSREHSDPVQLELATLNIQLRLEGDELKDFVLISVAEISEHKSEGVVVLNQAFVPQCLQFSVSNYLTDNVADLFAQVQYRSRAIHTRLQAESSSKSYQSLMRDYLWLQVLGAWMPKLEQWSLDGSLLTRHLYLECVSMAGQMQGLEGKMPKSFPAWNQDALYSIFSTVFSELLVLLREVQIDNVSTLNWDKQLFVSRRLLRTLVDDRSLYNQGRFVLAVSSSIGATRLSEEFPRAAKLAGNSDIAGLVRNALSGVPLRHLPYAPSELKSLNDAAYFEIDTKSELWQALIKRDEAIALHIDERIDDLHVDFHVIR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9924 - -


  Protein sequence: 439 a.a.    

>T6CP010954 GQ118992:7369-8685 [Vibrio anguillarum] [TssK]
MDNNKVVWSEGMFLSPQHFQQQERYVEHFTREFAGQISPNAYGFTSLELDRSMLNIGKVSVRRAKGIFPDGTPFEIEQAL
VLDVPKNTSHKKVYLALPVSRPGTIDVGEDARLRHSSQEHPVYDTSREHSDPVQLELATLNIQLRLEGDELKDFVLISVA
EISEHKSEGVVVLNQAFVPQCLQFSVSNYLTDNVADLFAQVQYRSRAIHTRLQAESSSKSYQSLMRDYLWLQVLGAWMPK
LEQWSLDGSLLTRHLYLECVSMAGQMQGLEGKMPKSFPAWNQDALYSIFSTVFSELLVLLREVQIDNVSTLNWDKQLFVS
RRLLRTLVDDRSLYNQGRFVLAVSSSIGATRLSEEFPRAAKLAGNSDIAGLVRNALSGVPLRHLPYAPSELKSLNDAAYF
EIDTKSELWQALIKRDEAIALHIDERIDDLHVDFHVIR*

  Nucleotide sequence: 1317 bp    

>T6CP010954 GQ118992:7369-8685 [Vibrio anguillarum] [TssK]
ATGGATAATAATAAAGTCGTGTGGAGTGAGGGGATGTTCCTTTCCCCTCAGCACTTTCAACAGCAAGAGCGCTATGTTGA
ACATTTTACTCGTGAGTTCGCCGGACAAATTAGCCCTAATGCTTATGGATTCACCTCGCTAGAGCTTGACCGTTCGATGT
TGAACATTGGTAAGGTTTCGGTGCGTCGCGCTAAAGGCATTTTCCCAGATGGAACACCATTTGAAATTGAGCAAGCACTC
GTGCTCGATGTGCCGAAAAATACCAGTCATAAGAAAGTGTATCTGGCTCTTCCGGTTTCAAGACCGGGCACTATTGATGT
GGGAGAAGACGCGCGTCTTAGACACTCTTCACAAGAACACCCCGTTTACGATACCAGCCGAGAGCACAGTGACCCGGTTC
AATTAGAGCTAGCAACGTTGAACATTCAGCTGCGTTTGGAAGGGGATGAGCTAAAAGATTTTGTGTTGATATCCGTTGCT
GAAATCAGTGAACACAAATCTGAAGGTGTTGTTGTGTTGAACCAAGCATTCGTTCCCCAATGCTTGCAGTTTTCCGTATC
TAACTACCTAACCGATAACGTTGCTGATCTATTTGCACAAGTACAATACCGTTCCCGAGCGATTCATACTCGTTTACAAG
CGGAGTCCAGCAGTAAAAGCTATCAGTCGTTGATGCGTGACTACTTGTGGCTGCAAGTACTGGGGGCTTGGATGCCAAAG
CTTGAACAATGGAGTCTAGATGGCTCGTTGCTGACACGTCATCTTTATTTAGAGTGTGTTTCGATGGCTGGGCAGATGCA
GGGTTTAGAAGGGAAGATGCCAAAGTCTTTCCCTGCATGGAACCAAGATGCGCTATACAGCATTTTTTCGACCGTGTTTT
CTGAGTTACTGGTGTTACTGCGTGAGGTTCAGATAGATAACGTATCAACATTGAACTGGGACAAACAGCTGTTCGTTAGC
CGCCGCTTACTGCGCACACTGGTTGATGATCGCAGCCTATACAATCAAGGCCGTTTTGTGTTGGCCGTTTCCTCGTCTAT
CGGTGCCACTCGACTCAGTGAAGAGTTTCCTCGTGCTGCGAAGCTAGCAGGGAACAGTGATATTGCCGGTTTAGTGCGTA
ATGCACTTTCAGGTGTTCCTTTGCGCCATCTTCCTTATGCACCTTCTGAGTTGAAGTCTTTGAATGACGCCGCTTACTTC
GAAATCGATACTAAGTCTGAATTGTGGCAAGCGTTGATCAAACGTGATGAGGCGATCGCTCTTCATATTGATGAAAGAAT
TGATGATCTCCACGTCGATTTTCATGTGATCAGGTAG