Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 818696..818841 Replicon chromosome
Accession UFRD01000002
Organism Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 818736..818839 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 818696..818841 (-)

Genomic Context


Locus tag Coordinates Strand Size (bp) Protein ID Product Description
NCTC12023_00979 815122..815820 - 699 SUH96416.1 exodeoxyribonuclease X -
NCTC12023_00980 815844..816500 - 657 SUH96417.1 Putative amido hydrolase -
NCTC12023_00981 816608..816838 - 231 SUH96418.1 DNA polymerase III subunit theta -
NCTC12023_00982 816976..817350 + 375 SUH96419.1 Copper resistance protein CopC -
NCTC12023_00983 817351..818226 + 876 SUH96420.1 membrane protein -
NCTC12023_00984 818243..818596 + 354 SUH96421.1 Protein of uncharacterised function (DUF2511) -
- 818696..818841 - 146 - - Antitoxin
- 818736..818839 + 104 - - Toxin
NCTC12023_00987 818970..819824 - 855 SUH96422.1 integrase -
NCTC12023_00988 819884..820537 - 654 SUH96423.1 Rac prophage protein -
NCTC12023_00989 820568..820798 + 231 SUH96424.1 lytic enzyme -
NCTC12023_00990 820852..821385 + 534 SUH96425.1 exported phage protein -
NCTC12023_00991 821641..821808 - 168 SUH96426.1 lytic enzyme -
NCTC12023_00992 822116..822379 + 264 SUH96427.1 DNA breaking-rejoining protein -

Associated MGEs


MGE
detail
Similar
MGEs
Relative
position
MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - sopE2 813036..851340 38304


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T297229 UFRD01000002:818736-818839 [Salmonella enterica subsp. enterica serovar Typhimurium]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT297229 UFRD01000002:c818841-818696 [Salmonella enterica subsp. enterica serovar Typhimurium]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References