MGE detailed information
MGE type: Prophage MGE length: 38524 bp
Accession: NZ_CP075116 Location: 1986011..2024534 Organism: Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059881 Replicon: chromosome
Accession: NZ_CP075116 Location: 1986011..2024534 Organism: Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059881 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CCO40_RS09460 () | 1982284..1982925 | + | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| CCO40_RS09465 () | 1983025..1984203 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| CCO40_RS09470 () | 1984334..1984624 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| CCO40_RS09475 () | 1984692..1985045 | + | 354 | WP_001042123.1 | protein YebF | - |
| CCO40_RS09480 () | 1985139..1985798 | + | 660 | WP_000024707.1 | tellurite resistance TerB family protein | - |
| CCO40_RS09485 () | 1986011..1988062 | + | 2052 | WP_094889160.1 | oligopeptidase B | - |
| CCO40_RS09490 () | 1988099..1988797 | - | 699 | WP_000944287.1 | exodeoxyribonuclease X | - |
| CCO40_RS09495 () | 1988821..1989477 | - | 657 | WP_000100249.1 | carbon-nitrogen hydrolase family protein | - |
| CCO40_RS09500 () | 1989585..1989815 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| CCO40_RS09505 () | 1989953..1990327 | + | 375 | WP_094889159.1 | CopC domain-containing protein YobA | - |
| CCO40_RS09510 () | 1990328..1991203 | + | 876 | WP_094889158.1 | copper homeostasis membrane protein CopD | - |
| CCO40_RS09515 () | 1991220..1991573 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 1991675..1991818 | - | 144 | - | - | Antitoxin Detail |
| - | 1991713..1991816 | + | 104 | - | - | Toxin Detail |
| CCO40_RS09520 () | 1991947..1992870 | - | 924 | Protein_1864 | hypothetical protein ; Integrase | Integrase |
| CCO40_RS22455 () | 1993134..1993595 | - | 462 | Protein_1865 | DNA breaking-rejoining protein | - |
| CCO40_RS09530 () | 1993584..1993775 | + | 192 | Protein_1866 | glycoside hydrolase family 19 protein | - |
| CCO40_RS09535 () | 1993829..1994362 | + | 534 | WP_001050883.1 | DUF2514 domain-containing protein | - |
| CCO40_RS09540 () | 1994619..1994786 | - | 168 | WP_000789529.1 | lytic enzyme | - |
| CCO40_RS09545 () | 1995094..1995354 | + | 261 | Protein_1869 | DUF1441 family protein | - |
| CCO40_RS09550 () | 1995356..1995616 | + | 261 | Protein_1870 | hypothetical protein | - |
| CCO40_RS22460 () | 1995769..1996056 | + | 288 | Protein_1871 | macro domain-containing protein | - |
| CCO40_RS09560 () | 1996069..1996580 | + | 512 | Protein_1872 | tail fiber assembly protein | - |
| CCO40_RS09565 () | 1996677..1996877 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| CCO40_RS22465 () | 1997267..1997447 | - | 181 | Protein_1874 | IS3 family transposase | - |
| CCO40_RS09570 () | 1997438..1997539 | + | 102 | Protein_1875 | arsenic transporter | - |
| CCO40_RS22470 () | 1998161..1998393 | + | 233 | Protein_1876 | helix-turn-helix domain-containing protein | - |
| CCO40_RS09580 () | 1998720..1999334 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| CCO40_RS09585 () | 1999344..1999502 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| CCO40_RS09590 () | 1999635..2000549 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| CCO40_RS09595 () | 2001879..2002301 | - | 423 | Protein_1880 | hypothetical protein ; Integrase | Integrase |
| CCO40_RS09600 () | 2002371..2003565 | + | 1195 | Protein_1881 | IS256 family transposase IS285 | Transposase |
| CCO40_RS09605 () | 2003711..2003851 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| CCO40_RS09610 () | 2004017..2004286 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| CCO40_RS09615 () | 2004656..2005075 | + | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| CCO40_RS09620 () | 2005462..2005938 | - | 477 | WP_000030935.1 | hypothetical protein | - |
| CCO40_RS09625 () | 2006268..2006663 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| CCO40_RS09630 () | 2007347..2008069 | + | 723 | WP_094889327.1 | Guanine nucleotide exchange factor sopE2 | VF |
| CCO40_RS09635 () | 2008354..2008518 | + | 165 | WP_001134856.1 | membrane protein | - |
| CCO40_RS09640 () | 2008742..2009392 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| CCO40_RS09645 () | 2009411..2009602 | - | 192 | WP_000457838.1 | DUF1482 family protein | - |
| CCO40_RS09650 () | 2009713..2009949 | - | 237 | WP_024131167.1 | YebV family protein | - |
| CCO40_RS09655 () | 2010067..2011506 | - | 1440 | WP_001670762.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CCO40_RS09660 () | 2011584..2014217 | - | 2634 | WP_170930890.1 | hypothetical protein | VF |
| CCO40_RS09665 () | 2014186..2015469 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| CCO40_RS09670 () | 2015598..2016095 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| CCO40_RS09675 () | 2016193..2016879 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| CCO40_RS09680 () | 2016899..2018947 | + | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| CCO40_RS09685 () | 2019141..2020022 | + | 882 | WP_000984498.1 | protease HtpX | - |
| CCO40_RS09690 () | 2020070..2021443 | - | 1374 | WP_094889325.1 | MFS transporter | - |
| CCO40_RS09695 () | 2021619..2022410 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| CCO40_RS09700 () | 2022622..2022861 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| CCO40_RS09705 () | 2023019..2023162 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| CCO40_RS09710 () | 2023233..2023520 | + | 288 | WP_001000660.1 | YebO family protein | - |
| CCO40_RS09715 () | 2024169..2024312 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| CCO40_RS09720 () | 2024325..2024534 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| CCO40_RS09725 () | 2024754..2026499 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| CCO40_RS09730 () | 2026565..2027374 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| CCO40_RS09735 () | 2027371..2027937 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| CCO40_RS09740 () | 2028347..2028805 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.004 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.009 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.004 |