Detailed information of TA system TA020681

Bioinformatically predicted

Overview

TA module

• Type: VIII
• Classification (family/domain): SdsR-RyeA/-
• Location: 1968048..1968193
• Replicon: chromosome
• Accession: NC_003197
• Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. LT2

Toxin (RNA)

Gene name	SdsR
Locus tag	-
Coordinates	1968050..1968153 (-)

Antitoxin (RNA)

Gene name	RyeA
Locus tag	-
Coordinates	1968048..1968193 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
STM1867	1963176..1963376	+	201	NP_460822.1	PhoPQ-activated protein	-
STM1868	1963473..1964354	-	882	NP_460823.1	phage-tail assembly protein-like protein	-
STM1868A	1965080..1965247	+	168	NP_460824.1	lytic enzyme	-
STM1869	1965504..1966037	-	534	NP_460825.1	phage-tail assembly protein-like protein	-
STM1869A	1966091..1966378	-	288	NP_460826.1	hypothetical protein	-
STM1870	1966511..1967005	+	495	NP_460827.1	recE-like protein	-
STM1871	1967023..1967919	+	897	NP_448287.1	putative phage integrase protein	-
-	1968048..1968193	+	146	-	-	Antitoxin
-	1968050..1968153	-	104	-	-	Toxin
STM1872	1968116..1968235	-	120	NP_460829.1	putative cytoplasmic protein	-
STM1873	1968293..1968646	-	354	NP_460830.1	putative periplasmic or exported protein	-
STM1874	1968663..1969538	-	876	NP_460831.1	putative inner membrane protein	-
STM1875	1969539..1969913	-	375	NP_460832.1	similar Cu resistance protein CopC	-
STM1876	1970051..1970281	+	231	NP_460833.1	DNA polymerase III, theta subunit	-
STM1877	1970389..1971045	+	657	NP_460834.1	putative amidohydrolase	-
STM1878	1971069..1971767	+	699	NP_460835.1	DNA exonuclease X	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View UFRD01000002 Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 Prophage TA297229 813036..851340 0 View NC_016856 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Prophage TA026047 1954607..1985261 0.005 View NC_016854 Salmonella enterica serovar Typhimurium Prophage TA026033 1928777..1959044 0.01 View NC_016863 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Prophage TA026076 1895143..1935129 0.001 View NC_021812 Salmonella enterica subsp. enterica serovar Heidelberg str. Prophage TA029796 2424901..2455569 0.009 View NC_021820 Salmonella enterica subsp. enterica serovar 4,5,12:i:- str. Prophage TA029825 3183590..3238108 0.009 View NC_022544 Salmonella enterica subsp. enterica serovar Typhimurium str. DT2 Prophage TA030165 1885289..1923607 0 View NZ_AP023288 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3835 Prophage TA037175 2135223..2173540 0 View NZ_AP023289 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3837 Prophage TA037199 2201777..2241771 0.002 View NZ_AP023290 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3844 Prophage TA037223 2096593..2136587 0.001 View NZ_AP023291 Salmonella enterica subsp. enterica serovar Typhimurium strain L-4126 Prophage TA037247 2108556..2136556 0.008 View NZ_AP023292 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4233 Prophage TA037271 2082074..2120390 0 View NZ_AP023294 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4261 Prophage TA037295 2081358..2119674 0 View NZ_AP023300 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4445 Prophage TA037344 2065261..2119785 0.009 View NZ_AP023303 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4526 Prophage TA037375 2122962..2177487 0.009 View NZ_AP023306 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4567 Prophage TA037421 2065259..2119783 0.009 View NZ_AP023309 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4578 Prophage TA037454 2054059..2092375 0 View NZ_AP023313 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4605 Prophage TA037503 2073537..2111853 0 View NZ_AP023315 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4614 Prophage TA037532 2081441..2119757 0 View NZ_AP023317 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4681 Prophage TA037557 2106458..2159112 0.009 View NZ_CP047522 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF11216 Prophage TA146337 2819709..2859703 0.002 View NZ_CP047529 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10640 Prophage TA146417 2832708..2887233 0.009 View NZ_CP047531 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10484 Prophage TA146438 2126538..2166532 0.002 View NZ_CP047540 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10359 Prophage TA146518 2096291..2151592 0.01 View NZ_CP047544 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10250 Prophage TA146568 2152982..2207507 0.01 View NZ_CP047550 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10057 Prophage TA146643 2140221..2168797 0.007 View NZ_CP047553 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10231 Prophage TA146672 2819492..2874017 0.009 View NZ_CP047555 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10112 Prophage TA146703 3988931..4028925 0.002 View NZ_CP067091 Salmonella enterica subsp. enterica serovar Typhimurium strain ER3625 Prophage TA185716 1935468..1971691 0.001 View NZ_CP067397 Salmonella enterica subsp. enterica serovar Typhimurium strain LB5000 Prophage TA186245 1936204..1974513 0 View NZ_CP068018 Salmonella enterica strain 1722 Prophage TA186441 2602225..2656750 0.009 View NZ_CP068696 Salmonella enterica subsp. enterica serovar Typhimurium strain NCCP16345 Prophage TA187605 2576270..2616256 0.001 View NZ_CP069381 Salmonella enterica strain GSJ/2016-Sal-016 Prophage TA190273 1995955..2034279 0.004 View NZ_CP074092 Salmonella enterica subsp. enterica serovar Typhimurium strain SO_8752_Stm Prophage TA201368 1935544..1973853 0 View NZ_CP074094 Salmonella enterica subsp. enterica serovar Typhimurium strain A_cip Prophage TA201393 1935698..1974007 0.007 View NZ_CP074096 Salmonella enterica subsp. enterica serovar Typhimurium strain 2B_cip Prophage TA201417 1935712..1975698 0.009 View NZ_CP074098 Salmonella enterica subsp. enterica serovar Typhimurium strain C_cip Prophage TA201441 1935763..1974080 0.007 View NZ_CP074663 Salmonella enterica subsp. enterica serovar Typhimurium strain CFSAN008081 Prophage TA202570 2095146..2149656 0.009 View NZ_CP075116 Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059881 Prophage TA202976 1986011..2024534 0.004 View NZ_CP075141 Salmonella enterica strain CFSAN033950 Prophage TA203276 1962917..2017434 0.009 View NZ_CP077704 Salmonella enterica subsp. enterica strain CFSAN058565 Prophage TA207586 2054322..2092246 0.008 View NZ_CP081187 Salmonella enterica strain sg1722-1 Prophage TA212651 2079863..2134388 0.009 View NZ_CP081189 Salmonella enterica strain sg1722-2 Prophage TA212675 2057993..2085993 0.008 View NZ_CP082929 Salmonella enterica subsp. enterica serovar London isolate N18-04674 Prophage TA215634 1973385..2012286 0.007 View NZ_CP085696 Salmonella enterica subsp. enterica serovar Saintpaul strain S25 Prophage TA221070 2002388..2042389 0.005 View NZ_CP085819 Salmonella enterica subsp. enterica serovar Typhimurium strain Blastoise Prophage TA221971 4011205..4049513 0 View NZ_CP085983 Salmonella enterica strain SZL 31 Prophage TA222386 2250893..2289204 0.009 View NZ_CP085987 Salmonella enterica strain SZL 38 Prophage TA222405 416871..455188 0 View NZ_CP086118 Salmonella enterica subsp. enterica serovar Typhimurium strain S34 Prophage TA222552 2107109..2145426 0 View NZ_CP088138 Salmonella enterica subsp. enterica serovar Hissar strain SCPM-O-B-4549 Prophage TA226794 2112541..2150850 0 View NZ_CP090304 Salmonella enterica subsp. enterica serovar Typhimurium strain ZJUJY Prophage TA230377 1935544..1973853 0 View NZ_CP090529 Salmonella enterica strain 2008079-SE Prophage TA231019 2122749..2177274 0.009 View NZ_CP090533 Salmonella enterica strain 2017005-SE Prophage TA231050 2609961..2637961 0.008 View NZ_CP090539 Salmonella enterica strain 2016062-SE Prophage TA231099 2185771..2225765 0.002 View NZ_CP090541 Salmonella enterica strain 2010112-SE Prophage TA231124 2104240..2142557 0 View NZ_CP090545 Salmonella enterica strain 2017028-SE Prophage TA231149 2183982..2222299 0 View NZ_CP091547 Salmonella enterica strain 1559 Prophage TA233656 2610379..2638379 0.008 View NZ_CP091566 Salmonella enterica strain 137 Prophage TA233820 3997966..4052491 0.009 View NZ_CP091569 Salmonella enterica strain 131 Prophage TA233836 2085869..2140394 0.009 View NZ_CP092510 Salmonella enterica subsp. enterica serovar Thompson Prophage TA236335 2046058..2084756 0.006 View NZ_CP092627 Salmonella enterica subsp. enterica serovar Thompson strain MFDS1011657 Prophage TA236737 2045977..2084675 0.006 View NZ_CP092690 Salmonella enterica subsp. enterica serovar Thompson strain MFDS1011716 Prophage TA236946 2046079..2084777 0.006 View NZ_CP093373 Salmonella enterica subsp. enterica serovar Infantis strain 423_13 Prophage TA238304 1977604..2015913 0.009 View NZ_CP098438 Salmonella enterica subsp. enterica serovar Typhimurium strain ATOMSal-L6 Prophage TA247622 2065516..2118162 0.008 View NZ_CP099705 Salmonella enterica subsp. enterica serovar Typhimurium strain 013+ Prophage TA249294 2081505..2136022 0.01 View NZ_CP099705 Salmonella enterica subsp. enterica serovar Typhimurium strain 013+ Prophage TA249294 2097713..2136022 0 View NZ_CP100691 Salmonella enterica subsp. enterica serovar Typhimurium strain R17.3867 Prophage TA251039 2195289..2234936 0.001 View NZ_CP100702 Salmonella enterica subsp. enterica serovar Thompson strain R18.0872 Prophage TA251111 1973097..2011795 0.006 View NZ_CP100707 Salmonella enterica subsp. enterica serovar Typhimurium strain R18.0409 Prophage TA251134 2086618..2124935 0 View NZ_CP100715 Salmonella enterica subsp. enterica serovar Typhimurium strain R17.5474 Prophage TA251179 2076742..2108723 0.007 View NZ_CP101372 Salmonella enterica strain SC2016025 Prophage TA251953 2446527..2484844 0 View NZ_CP101373 Salmonella enterica strain SC2016042 Prophage TA251972 2155588..2193904 0.001 View NZ_CP101376 Salmonella enterica strain SC2016091 Prophage TA252013 2122697..2161014 0 View NZ_CP101379 Salmonella enterica strain SC2016290 Prophage TA252036 2115963..2156321 0.003 View NZ_CP101382 Salmonella enterica strain SC2017030 Prophage TA252059 2145349..2199874 0.01 View NZ_CP101386 Salmonella enterica strain SC2017100 Prophage TA252079 2157655..2212180 0.01 View NZ_CP101386 Salmonella enterica strain SC2017100 Prophage TA252079 2173863..2212180 0 View NZ_CP101388 Salmonella enterica strain SC2017167 Prophage TA252099 2124791..2163108 0 View NZ_CP101907 Salmonella enterica subsp. enterica strain QA-1986 973 Prophage TA252861 284727..323027 0 View NZ_CP101940 Salmonella enterica subsp. enterica strain QA-1986 974 Prophage TA253038 284727..323027 0 View NZ_CP102669 Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 Prophage TA253913 2164367..2202676 0 View NZ_CP104484 Salmonella enterica strain SalSpp_sample_07_No.3 Prophage TA258079 2095004..2133321 0 View NZ_CP110201 Salmonella enterica subsp. enterica serovar Typhimurium strain 1104-65 Prophage TA263416 2083122..2137647 0.009 View NZ_CP113535 Salmonella enterica strain ZLQ Prophage TA265903 2121910..2176435 0.009 View NZ_CP113538 Salmonella enterica strain XSK Prophage TA265956 2021835..2076351 0.009 View NZ_CP116042 Salmonella enterica subsp. enterica serovar 14[5]12:i:- strain BL708 Prophage TA267682 2122355..2160673 0 View NZ_CP117244 Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 Prophage TA270173 2073445..2111754 0 View NZ_CP117327 Salmonella enterica subsp. enterica serovar Saintpaul strain RM106 Prophage TA270527 1983271..2021595 0.004 View NZ_CP117338 Salmonella enterica subsp. enterica serovar Typhimurium strain RM095 Prophage TA270612 2022987..2077503 0.009 View NZ_CP117348 Salmonella enterica subsp. enterica serovar Heidelberg strain RM101 Prophage TA270699 2053842..2092165 0.003 View NZ_CP117370 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain RM054 Prophage TA270873 2121062..2161056 0.002 View NZ_CP117370 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain RM054 Prophage TA270873 2122739..2161056 0 View NZ_CP117398 Salmonella enterica subsp. enterica serovar Typhimurium strain RM015 Prophage TA271143 2112186..2166703 0.009 View NZ_CP117400 Salmonella enterica subsp. enterica serovar Typhimurium strain RM014 Prophage TA271163 2127075..2159048 0.007 View NZ_CP117404 Salmonella enterica subsp. enterica serovar Typhimurium strain RM085 Prophage TA271196 2075140..2113447 0 View NZ_CP117696 Salmonella enterica subsp. enterica serovar London strain F1 Prophage TA272044 1951158..1990059 0.007 View NZ_CP121262 Salmonella enterica subsp. enterica serovar Typhimurium strain 013 Prophage TA276144 2067806..2106115 0 View NZ_CP128261 Salmonella enterica subsp. enterica serovar Heidelberg isolate FT3-7B Prophage TA284496 2003650..2041973 0.003 View NZ_OU015323 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00004549 isolate AUSMDU00004549 Prophage TA294610 315464..368118 0.008 View NZ_OU015340 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00027944 isolate AUSMDU00027944 Prophage TA294632 315465..368119 0.008 View NC_016856 Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S Prophage TA026047 1954607..1985261 0.005 View UFRD01000002 Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 Prophage TA297229 813036..851340 0	inside	Prophage	-	sopE2	1935544..1973853	38309

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Sequences

Toxin

Nucleotide

• Length: 104 bp

>T20681 NC_003197:c1968153-1968050 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin

Nucleotide

• Length: 146 bp

>AT20681 NC_003197:1968048-1968193 [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Antitoxin