MGE detailed information
MGE type: Prophage MGE length: 38318 bp
Accession: NZ_CP090541 Location: 2104240..2142557 Organism: Salmonella enterica strain 2010112-SE Replicon: chromosome
Accession: NZ_CP090541 Location: 2104240..2142557 Organism: Salmonella enterica strain 2010112-SE Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0F62_RS10245 () | 2100513..2101154 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| L0F62_RS10250 () | 2101254..2102432 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| L0F62_RS10255 () | 2102563..2102853 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| L0F62_RS10260 () | 2102921..2103274 | + | 354 | WP_001042119.1 | protein YebF | - |
| L0F62_RS10265 () | 2103368..2104027 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| L0F62_RS10270 () | 2104240..2106291 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| L0F62_RS10275 () | 2106326..2107024 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| L0F62_RS10280 () | 2107048..2107704 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| L0F62_RS10285 () | 2107812..2108042 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| L0F62_RS10290 () | 2108180..2108554 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| L0F62_RS10295 () | 2108555..2109430 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| L0F62_RS10300 () | 2109447..2109800 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2109900..2110045 | - | 146 | - | - | Antitoxin Detail |
| - | 2109940..2110043 | + | 104 | - | - | Toxin Detail |
| L0F62_RS10305 () | 2110174..2111097 | - | 924 | Protein_2018 | hypothetical protein ; Integrase | Integrase |
| L0F62_RS10310 () | 2111361..2111822 | - | 462 | Protein_2019 | DNA breaking-rejoining protein | - |
| L0F62_RS10315 () | 2111811..2112002 | + | 192 | Protein_2020 | glycoside hydrolase family 19 protein | - |
| L0F62_RS10320 () | 2112056..2112589 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| L0F62_RS10325 () | 2112846..2113013 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| L0F62_RS10330 () | 2113078..2113266 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| L0F62_RS10335 () | 2113321..2113581 | + | 261 | Protein_2024 | DUF1441 family protein | - |
| L0F62_RS10340 () | 2113796..2114140 | + | 345 | Protein_2025 | macro domain-containing protein | - |
| L0F62_RS10345 () | 2114150..2114620 | + | 471 | Protein_2026 | tail fiber assembly protein | - |
| L0F62_RS10350 () | 2114717..2114917 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| L0F62_RS10355 () | 2115307..2115487 | - | 181 | Protein_2028 | IS3 family transposase | - |
| L0F62_RS10360 () | 2115478..2115579 | + | 102 | Protein_2029 | arsenic transporter | - |
| L0F62_RS10365 () | 2116201..2116433 | + | 233 | Protein_2030 | helix-turn-helix domain-containing protein | - |
| L0F62_RS10370 () | 2116760..2117374 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| L0F62_RS10375 () | 2117384..2117542 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| L0F62_RS10380 () | 2117675..2118589 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| L0F62_RS10385 () | 2119902..2120324 | - | 423 | Protein_2034 | hypothetical protein ; Integrase | Integrase |
| L0F62_RS10390 () | 2120394..2121588 | + | 1195 | Protein_2035 | IS256 family transposase IS285 | Transposase |
| L0F62_RS10395 () | 2121734..2121874 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| L0F62_RS10400 () | 2122040..2122309 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| L0F62_RS10405 () | 2122679..2123098 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| L0F62_RS10410 () | 2123486..2123962 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| L0F62_RS10415 () | 2124292..2124687 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| L0F62_RS10420 () | 2125370..2126092 | + | 723 | WP_125670228.1 | Guanine nucleotide exchange factor sopE2 | VF |
| L0F62_RS10425 () | 2126377..2126541 | + | 165 | WP_001134856.1 | membrane protein | - |
| L0F62_RS10430 () | 2126765..2127415 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| L0F62_RS10435 () | 2127434..2127625 | - | 192 | WP_000457836.1 | YebW family protein | - |
| L0F62_RS10440 () | 2127736..2127972 | - | 237 | WP_024131108.1 | YebV family protein | - |
| L0F62_RS10445 () | 2128090..2129529 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L0F62_RS10450 () | 2129607..2132240 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| L0F62_RS10455 () | 2132209..2133492 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| L0F62_RS10460 () | 2133621..2134118 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| L0F62_RS10465 () | 2134216..2134902 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| L0F62_RS10470 () | 2134922..2136970 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| L0F62_RS10475 () | 2137164..2138045 | + | 882 | WP_000984498.1 | protease HtpX | - |
| L0F62_RS10480 () | 2138093..2139466 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| L0F62_RS10485 () | 2139642..2140433 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| L0F62_RS10490 () | 2140645..2140884 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| L0F62_RS10495 () | 2141042..2141185 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| L0F62_RS10500 () | 2141256..2141543 | + | 288 | WP_001000660.1 | YebO family protein | - |
| L0F62_RS10505 () | 2142192..2142335 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| L0F62_RS10510 () | 2142348..2142557 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| L0F62_RS10515 () | 2142777..2144522 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| L0F62_RS10520 () | 2144588..2145397 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| L0F62_RS10525 () | 2145394..2145960 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| L0F62_RS10530 () | 2146370..2146828 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |