Detailed information of TA system TA026047

Bioinformatically predicted

Overview

TA module

• Type: VIII
• Classification (family/domain): SdsR-RyeA/-
• Location: 1979456..1979601
• Accession: NC_016856
• Organism: Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S

Toxin (RNA)

Gene name	SdsR
Locus tag	-
Coordinates	1979458..1979561 (-)

Antitoxin (RNA)

Gene name	RyeA
Locus tag	-
Coordinates	1979456..1979601 (+)

Genomic Context

Locus tag	Coordinates	Strand	Size (bp)	Protein ID	Product	Description
STM14_RS10225 (STM14_2265)	1974584..1974784	+	201	WP_010989029.1	PagK family vesicle-borne virulence factor	-
STM14_RS26775	1974881..1975351	-	471	Protein_1900	tail fiber assembly protein	-
STM14_RS26780	1975361..1975705	-	345	Protein_1901	macro domain-containing protein	-
STM14_RS10235 (STM14_2267)	1975920..1976180	-	261	Protein_1902	DUF1441 family protein	-
STM14_RS10240 (STM14_2268)	1976235..1976423	+	189	WP_001521334.1	hypothetical protein	-
STM14_RS10245 (STM14_2269)	1976488..1976655	+	168	WP_000789530.1	lytic enzyme	-
STM14_RS10250 (STM14_2272)	1976912..1977445	-	534	WP_001050882.1	DUF2514 domain-containing protein	-
STM14_RS10255 (STM14_2273)	1977499..1977690	-	192	Protein_1906	glycoside hydrolase family 19 protein	-
STM14_RS26785	1977679..1978140	+	462	Protein_1907	DNA breaking-rejoining protein	-
STM14_RS26045 (STM14_2275)	1978404..1979327	+	924	Protein_1908	tyrosine-type recombinase/integrase	-
-	1979456..1979601	+	146	-	-	Antitoxin
-	1979458..1979561	-	104	-	-	Toxin
STM14_RS10275 (STM14_2278)	1979701..1980054	-	354	WP_000722368.1	YebY family protein	-
STM14_RS10280 (STM14_2279)	1980071..1980946	-	876	WP_000979702.1	copper homeostasis membrane protein CopD	-
STM14_RS10285 (STM14_2280)	1980947..1981321	-	375	WP_000168393.1	CopC domain-containing protein YobA	-
STM14_RS10290 (STM14_2281)	1981459..1981689	+	231	WP_000856224.1	DNA polymerase III subunit theta	-
STM14_RS10295 (STM14_2282)	1981797..1982453	+	657	WP_000100258.1	carbon-nitrogen hydrolase family protein	-
STM14_RS10300 (STM14_2283)	1982477..1983175	+	699	WP_000944282.1	exodeoxyribonuclease X	-

Associated MGEs

MGE detail	Similar MGEs	Relative position	MGE Type	Cargo ARG	Virulence gene	Coordinates	Length (bp)
	Similar MGE(s) Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE. Detail Genome accession Organism MGE type Related TA Coordinates Mash distance View NC_003197 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Prophage TA020681 1935544..1973853 0.005 View NC_003197 Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 Prophage TA020681 1935544..1973853 0.005 View UFRD01000002 Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 Prophage TA297229 813036..851340 0.006 View NC_016863 Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1 Prophage TA026076 1895143..1935129 0.007 View NC_021812 Salmonella enterica subsp. enterica serovar Heidelberg str. Prophage TA029796 2424901..2455569 0.004 View NC_022525 Salmonella enterica subsp. enterica serovar Thompson str. RM6836 Prophage TA030141 1910508..1938889 0.009 View NC_022544 Salmonella enterica subsp. enterica serovar Typhimurium str. DT2 Prophage TA030165 1885289..1923607 0.005 View NZ_AP023288 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3835 Prophage TA037175 2135223..2173540 0.005 View NZ_AP023289 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3837 Prophage TA037199 2201777..2241771 0.007 View NZ_AP023290 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-3844 Prophage TA037223 2096593..2136587 0.007 View NZ_AP023291 Salmonella enterica subsp. enterica serovar Typhimurium strain L-4126 Prophage TA037247 2108556..2136556 0.003 View NZ_AP023292 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4233 Prophage TA037271 2082074..2120390 0.005 View NZ_AP023294 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4261 Prophage TA037295 2081358..2119674 0.005 View NZ_AP023299 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4334 Prophage TA037320 2080618..2104665 0.008 View NZ_AP023309 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4578 Prophage TA037454 2054059..2092375 0.005 View NZ_AP023311 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4596 Prophage TA037479 2084392..2105691 0.009 View NZ_AP023313 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4605 Prophage TA037503 2073537..2111853 0.005 View NZ_AP023315 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4614 Prophage TA037532 2081441..2119757 0.005 View NZ_CP047522 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF11216 Prophage TA146337 2819709..2859703 0.007 View NZ_CP047531 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10484 Prophage TA146438 2126538..2166532 0.007 View NZ_CP047546 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10236 Prophage TA146593 2132270..2153569 0.009 View NZ_CP047550 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10057 Prophage TA146643 2140221..2168797 0.002 View NZ_CP047555 Salmonella enterica subsp. enterica serovar Typhimurium strain SJTUF10112 Prophage TA146703 3988931..4028925 0.007 View NZ_CP067091 Salmonella enterica subsp. enterica serovar Typhimurium strain ER3625 Prophage TA185716 1935468..1971691 0.007 View NZ_CP067397 Salmonella enterica subsp. enterica serovar Typhimurium strain LB5000 Prophage TA186245 1936204..1974513 0.005 View NZ_CP068696 Salmonella enterica subsp. enterica serovar Typhimurium strain NCCP16345 Prophage TA187605 2576270..2616256 0.007 View NZ_CP069381 Salmonella enterica strain GSJ/2016-Sal-016 Prophage TA190273 1995955..2034279 0.01 View NZ_CP074092 Salmonella enterica subsp. enterica serovar Typhimurium strain SO_8752_Stm Prophage TA201368 1935544..1973853 0.005 View NZ_CP075116 Salmonella enterica subsp. enterica serovar Stanleyville strain CFSAN059881 Prophage TA202976 1986011..2024534 0.009 View NZ_CP081189 Salmonella enterica strain sg1722-2 Prophage TA212675 2057993..2085993 0.003 View NZ_CP085699 Salmonella enterica subsp. enterica serovar Typhimurium strain S29 Prophage TA221092 2124284..2149136 0.009 View NZ_CP085819 Salmonella enterica subsp. enterica serovar Typhimurium strain Blastoise Prophage TA221971 4011205..4049513 0.005 View NZ_CP085981 Salmonella enterica strain SZL 30 Prophage TA222357 1234487..1265143 0.009 View NZ_CP085987 Salmonella enterica strain SZL 38 Prophage TA222405 416871..455188 0.005 View NZ_CP086118 Salmonella enterica subsp. enterica serovar Typhimurium strain S34 Prophage TA222552 2107109..2145426 0.005 View NZ_CP088138 Salmonella enterica subsp. enterica serovar Hissar strain SCPM-O-B-4549 Prophage TA226794 2112541..2150850 0.005 View NZ_CP090304 Salmonella enterica subsp. enterica serovar Typhimurium strain ZJUJY Prophage TA230377 1935544..1973853 0.005 View NZ_CP090533 Salmonella enterica strain 2017005-SE Prophage TA231050 2609961..2637961 0.003 View NZ_CP090539 Salmonella enterica strain 2016062-SE Prophage TA231099 2185771..2225765 0.007 View NZ_CP090541 Salmonella enterica strain 2010112-SE Prophage TA231124 2104240..2142557 0.005 View NZ_CP090545 Salmonella enterica strain 2017028-SE Prophage TA231149 2183982..2222299 0.005 View NZ_CP091547 Salmonella enterica strain 1559 Prophage TA233656 2610379..2638379 0.003 View NZ_CP093386 Salmonella enterica strain P048595 Prophage TA238354 2111834..2137217 0.005 View NZ_CP098834 Salmonella enterica subsp. enterica serovar Typhimurium strain GD19PS1 Prophage TA248152 2101036..2126427 0.005 View NZ_CP099705 Salmonella enterica subsp. enterica serovar Typhimurium strain 013+ Prophage TA249294 2097713..2136022 0.005 View NZ_CP100691 Salmonella enterica subsp. enterica serovar Typhimurium strain R17.3867 Prophage TA251039 2195289..2234936 0.006 View NZ_CP100707 Salmonella enterica subsp. enterica serovar Typhimurium strain R18.0409 Prophage TA251134 2086618..2124935 0.005 View NZ_CP100715 Salmonella enterica subsp. enterica serovar Typhimurium strain R17.5474 Prophage TA251179 2076742..2108723 0.002 View NZ_CP100715 Salmonella enterica subsp. enterica serovar Typhimurium strain R17.5474 Prophage TA251179 2078061..2103452 0.005 View NZ_CP101372 Salmonella enterica strain SC2016025 Prophage TA251953 2446527..2484844 0.006 View NZ_CP101373 Salmonella enterica strain SC2016042 Prophage TA251972 2155588..2193904 0.006 View NZ_CP101376 Salmonella enterica strain SC2016091 Prophage TA252013 2122697..2161014 0.006 View NZ_CP101379 Salmonella enterica strain SC2016290 Prophage TA252036 2115963..2156321 0.009 View NZ_CP101379 Salmonella enterica strain SC2016290 Prophage TA252036 2117640..2143395 0.007 View NZ_CP101382 Salmonella enterica strain SC2017030 Prophage TA252059 2161557..2186948 0.005 View NZ_CP101386 Salmonella enterica strain SC2017100 Prophage TA252079 2173863..2212180 0.006 View NZ_CP101388 Salmonella enterica strain SC2017167 Prophage TA252099 2124791..2163108 0.006 View NZ_CP101907 Salmonella enterica subsp. enterica strain QA-1986 973 Prophage TA252861 284727..323027 0.005 View NZ_CP101940 Salmonella enterica subsp. enterica strain QA-1986 974 Prophage TA253038 284727..323027 0.005 View NZ_CP102669 Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 Prophage TA253913 2164367..2202676 0.005 View NZ_CP104366 Salmonella enterica subsp. enterica serovar Typhimurium strain PNUSAS028809 Prophage TA257780 2078173..2103556 0.005 View NZ_CP104484 Salmonella enterica strain SalSpp_sample_07_No.3 Prophage TA258079 2095004..2133321 0.006 View NZ_CP113535 Salmonella enterica strain ZLQ Prophage TA265903 2138118..2163509 0.005 View NZ_CP113538 Salmonella enterica strain XSK Prophage TA265956 2038043..2063425 0.005 View NZ_CP113541 Salmonella enterica strain CHC Prophage TA266012 2038169..2063551 0.005 View NZ_CP116042 Salmonella enterica subsp. enterica serovar 14[5]12:i:- strain BL708 Prophage TA267682 2122355..2160673 0.005 View NZ_CP117244 Salmonella enterica subsp. enterica serovar Typhimurium strain ATCC 14028 Prophage TA270173 2073445..2111754 0.005 View NZ_CP117327 Salmonella enterica subsp. enterica serovar Saintpaul strain RM106 Prophage TA270527 1983271..2021595 0.01 View NZ_CP117348 Salmonella enterica subsp. enterica serovar Heidelberg strain RM101 Prophage TA270699 2053842..2092165 0.009 View NZ_CP117370 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain RM054 Prophage TA270873 2121062..2161056 0.007 View NZ_CP117370 Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain RM054 Prophage TA270873 2122739..2161056 0.005 View NZ_CP117398 Salmonella enterica subsp. enterica serovar Typhimurium strain RM015 Prophage TA271143 2128394..2153777 0.005 View NZ_CP117400 Salmonella enterica subsp. enterica serovar Typhimurium strain RM014 Prophage TA271163 2127075..2159048 0.002 View NZ_CP117400 Salmonella enterica subsp. enterica serovar Typhimurium strain RM014 Prophage TA271163 2128394..2153777 0.005 View NZ_CP117404 Salmonella enterica subsp. enterica serovar Typhimurium strain RM085 Prophage TA271196 2075140..2113447 0.005 View NZ_CP120671 Salmonella enterica strain SC2020597 Prophage TA275342 4479751..4506915 0.01 View NZ_CP121068 Salmonella enterica subsp. enterica serovar Infantis strain R21.1575 Prophage TA275561 2624875..2655531 0.009 View NZ_CP121262 Salmonella enterica subsp. enterica serovar Typhimurium strain 013 Prophage TA276144 2067806..2106115 0.005 View NZ_CP121298 Salmonella enterica subsp. enterica strain KKP 3080 Prophage TA276257 2348558..2373940 0.005 View NZ_CP126138 Salmonella enterica subsp. enterica serovar Kottbus strain DSK01 Prophage TA282658 2101875..2127257 0.005 View NZ_CP128261 Salmonella enterica subsp. enterica serovar Heidelberg isolate FT3-7B Prophage TA284496 2003650..2041973 0.009 View NZ_OU015342 Salmonella enterica subsp. enterica serovar Typhimurium strain AUSMDU00007171 isolate AUSMDU00007171 Prophage TA294660 2121672..2147063 0.005 View UFRD01000002 Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 Prophage TA297229 813036..851340 0.006	inside	Prophage	-	sopE2	1954607..1985261	30654

Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.

Sequences

Toxin

Nucleotide

• Length: 104 bp

>T26047 NC_016856:c1979561-1979458 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin

Nucleotide

• Length: 146 bp

>AT26047 NC_016856:1979456-1979601 [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Antitoxin