MGE detailed information
MGE type: Prophage MGE length: 27165 bp
Accession: NZ_CP120671 Location: 4479751..4506915 Organism: Salmonella enterica strain SC2020597 Replicon: chromosome
Accession: NZ_CP120671 Location: 4479751..4506915 Organism: Salmonella enterica strain SC2020597 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| P4B13_RS21575 () | 4475187..4476560 | + | 1374 | WP_000416139.1 | MFS transporter | - |
| P4B13_RS21580 () | 4476608..4477489 | - | 882 | WP_000984498.1 | protease HtpX | - |
| P4B13_RS21585 () | 4477683..4479731 | - | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| P4B13_RS21590 () | 4479751..4480437 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| P4B13_RS21595 () | 4480535..4481032 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| P4B13_RS21600 () | 4481161..4482444 | + | 1284 | WP_001207293.1 | membrane integrity lipid transport subunit YebS | - |
| P4B13_RS21605 () | 4482413..4485046 | + | 2634 | WP_001535256.1 | Intermembrane transport protein YebT | VF |
| P4B13_RS21610 () | 4485124..4486563 | + | 1440 | WP_024137249.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| P4B13_RS21615 () | 4486681..4486917 | + | 237 | WP_024131108.1 | YebV family protein | - |
| P4B13_RS21620 () | 4487028..4487219 | + | 192 | WP_000457838.1 | DUF1482 family protein | - |
| P4B13_RS21625 () | 4487238..4487888 | - | 651 | WP_017465643.1 | protein-serine/threonine phosphatase | - |
| P4B13_RS21630 () | 4488112..4488276 | - | 165 | WP_001134856.1 | membrane protein | - |
| P4B13_RS21635 () | 4488561..4489283 | - | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| P4B13_RS21640 () | 4489967..4490362 | + | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| P4B13_RS21645 () | 4490668..4490859 | + | 192 | Protein_4221 | tyrosine-type recombinase/integrase | - |
| P4B13_RS21650 () | 4491943..4492857 | + | 915 | WP_001233445.1 | DMT family transporter | - |
| P4B13_RS21655 () | 4492990..4493148 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| P4B13_RS21660 () | 4493158..4493772 | + | 615 | WP_017466152.1 | disulfide bond formation protein B | - |
| P4B13_RS21665 () | 4494099..4494266 | - | 168 | WP_269465034.1 | helix-turn-helix domain-containing protein | - |
| P4B13_RS21670 () | 4494260..4494406 | + | 147 | WP_001520350.1 | hypothetical protein | - |
| P4B13_RS21675 () | 4494920..4495045 | - | 126 | WP_000457876.1 | hypothetical protein | - |
| P4B13_RS21680 () | 4495045..4495210 | + | 166 | Protein_4228 | IS3 family transposase | - |
| P4B13_RS21685 () | 4495613..4495813 | + | 201 | WP_031608121.1 | PagK family vesicle-borne virulence factor | - |
| P4B13_RS21690 () | 4495910..4496380 | - | 471 | Protein_4230 | tail fiber assembly protein | - |
| P4B13_RS21695 () | 4496390..4496734 | - | 345 | Protein_4231 | macro domain-containing protein | - |
| P4B13_RS21700 () | 4496949..4497209 | - | 261 | Protein_4232 | DUF1441 family protein | - |
| P4B13_RS21705 () | 4497517..4497684 | + | 168 | WP_000789530.1 | lytic enzyme | - |
| P4B13_RS21710 () | 4497941..4498473 | - | 533 | Protein_4234 | DUF2514 domain-containing protein | - |
| P4B13_RS21715 () | 4498527..4498718 | - | 192 | Protein_4235 | glycoside hydrolase family 19 protein | - |
| P4B13_RS21720 () | 4498707..4499858 | + | 1152 | Protein_4236 | PD-(D/E)XK nuclease-like domain-containing protein | - |
| P4B13_RS21725 () | 4499891..4500970 | + | 1080 | WP_017466154.1 | hypothetical protein ; Integrase | Integrase |
| - | 4501108..4501253 | + | 146 | - | - | Antitoxin Detail |
| - | 4501110..4501213 | - | 104 | - | - | Toxin Detail |
| P4B13_RS21730 () | 4501353..4501706 | - | 354 | WP_017466155.1 | YebY family protein | - |
| P4B13_RS21735 () | 4501723..4502598 | - | 876 | WP_017466156.1 | copper homeostasis membrane protein CopD | - |
| P4B13_RS21740 () | 4502599..4502973 | - | 375 | WP_022544651.1 | CopC domain-containing protein YobA | - |
| P4B13_RS21745 () | 4503111..4503341 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| P4B13_RS21750 () | 4503449..4504105 | + | 657 | WP_000100249.1 | carbon-nitrogen hydrolase family protein | - |
| P4B13_RS21755 () | 4504129..4504827 | + | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| P4B13_RS21760 () | 4504864..4506915 | - | 2052 | WP_000936990.1 | oligopeptidase B | - |
| P4B13_RS21765 () | 4507128..4507787 | - | 660 | WP_000024707.1 | tellurite resistance TerB family protein | - |
| P4B13_RS21770 () | 4507881..4508234 | - | 354 | WP_001042123.1 | protein YebF | - |
| P4B13_RS21775 () | 4508302..4508592 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| P4B13_RS21780 () | 4508723..4509901 | + | 1179 | WP_000173419.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| P4B13_RS21785 () | 4510001..4510642 | - | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.01 |