Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 4501108..4501253 Replicon chromosome
Accession NZ_CP120671
Organism Salmonella enterica strain SC2020597

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 4501110..4501213 (-)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 4501108..4501253 (+)

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
P4B13_RS21695 4496390..4496734 - 345 Protein_4231 macro domain-containing protein -
P4B13_RS21700 4496949..4497209 - 261 Protein_4232 DUF1441 family protein -
P4B13_RS21705 4497517..4497684 + 168 WP_000789530.1 lytic enzyme -
P4B13_RS21710 4497941..4498473 - 533 Protein_4234 DUF2514 domain-containing protein -
P4B13_RS21715 4498527..4498718 - 192 Protein_4235 glycoside hydrolase family 19 protein -
P4B13_RS21720 4498707..4499858 + 1152 Protein_4236 PD-(D/E)XK nuclease-like domain-containing protein -
P4B13_RS21725 4499891..4500970 + 1080 WP_017466154.1 phage integrase Arm DNA-binding domain-containing protein -
- 4501108..4501253 + 146 - - Antitoxin
- 4501110..4501213 - 104 - - Toxin
P4B13_RS21730 4501353..4501706 - 354 WP_017466155.1 YebY family protein -
P4B13_RS21735 4501723..4502598 - 876 WP_017466156.1 copper homeostasis membrane protein CopD -
P4B13_RS21740 4502599..4502973 - 375 WP_022544651.1 CopC domain-containing protein YobA -
P4B13_RS21745 4503111..4503341 + 231 WP_000856224.1 DNA polymerase III subunit theta -
P4B13_RS21750 4503449..4504105 + 657 WP_000100249.1 carbon-nitrogen hydrolase family protein -
P4B13_RS21755 4504129..4504827 + 699 WP_000944282.1 exodeoxyribonuclease X -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
inside Prophage - sopE2 4479751..4506915 27164


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences

Toxin        


Download         Length: 104 bp

>T275342 NZ_CP120671:c4501213-4501110 [Salmonella enterica]
GGCAAGGCGATTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 146 bp

>AT275342 NZ_CP120671:4501108-4501253 [Salmonella enterica]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAATCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCG

Structures

Antitoxin

Download structure file

Antitoxin

Download structure file

References