MGE detailed information
MGE type: Prophage MGE length: 39995 bp
Accession: NZ_CP090539 Location: 2185771..2225765 Organism: Salmonella enterica strain 2016062-SE Replicon: chromosome
Accession: NZ_CP090539 Location: 2185771..2225765 Organism: Salmonella enterica strain 2016062-SE Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| L0F59_RS10755 () | 2181872..2183683 | + | 1812 | WP_001069113.1 | phosphogluconate dehydratase | - |
| L0F59_RS10760 () | 2183721..2184362 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| L0F59_RS10765 () | 2184462..2185640 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| L0F59_RS10770 () | 2185771..2186061 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| L0F59_RS10775 () | 2186129..2186482 | + | 354 | WP_001042119.1 | protein YebF | - |
| L0F59_RS10780 () | 2186576..2187235 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| L0F59_RS10785 () | 2187448..2189499 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| L0F59_RS10790 () | 2189534..2190232 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| L0F59_RS10795 () | 2190256..2190912 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| L0F59_RS10800 () | 2191020..2191250 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| L0F59_RS10805 () | 2191388..2191762 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| L0F59_RS10810 () | 2191763..2192638 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| L0F59_RS10815 () | 2192655..2193008 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2193108..2193253 | - | 146 | - | - | Antitoxin Detail |
| - | 2193148..2193251 | + | 104 | - | - | Toxin Detail |
| L0F59_RS10820 () | 2193382..2194305 | - | 924 | Protein_2121 | hypothetical protein ; Integrase | Integrase |
| L0F59_RS10825 () | 2194569..2195030 | - | 462 | Protein_2122 | DNA breaking-rejoining protein | - |
| L0F59_RS10830 () | 2195019..2195210 | + | 192 | Protein_2123 | glycoside hydrolase family 19 protein | - |
| L0F59_RS10835 () | 2195264..2195797 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| L0F59_RS10840 () | 2196054..2196221 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| L0F59_RS10845 () | 2196286..2196474 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| L0F59_RS10850 () | 2196529..2196789 | + | 261 | Protein_2127 | DUF1441 family protein | - |
| L0F59_RS10855 () | 2197004..2197348 | + | 345 | Protein_2128 | macro domain-containing protein | - |
| L0F59_RS10860 () | 2197358..2197828 | + | 471 | Protein_2129 | tail fiber assembly protein | - |
| L0F59_RS10865 () | 2197925..2198125 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| L0F59_RS10870 () | 2198515..2198695 | - | 181 | Protein_2131 | IS3 family transposase | - |
| L0F59_RS10875 () | 2198695..2198820 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| L0F59_RS10880 () | 2199409..2199641 | + | 233 | Protein_2133 | helix-turn-helix domain-containing protein | - |
| L0F59_RS10885 () | 2199968..2200582 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| L0F59_RS10890 () | 2200592..2200750 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| L0F59_RS10895 () | 2200883..2201797 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| L0F59_RS10900 () | 2203110..2203532 | - | 423 | Protein_2137 | hypothetical protein ; Integrase | Integrase |
| L0F59_RS10905 () | 2203602..2204796 | + | 1195 | Protein_2138 | IS256 family transposase IS285 | Transposase |
| L0F59_RS10910 () | 2204942..2205082 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| L0F59_RS10915 () | 2205248..2205517 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| L0F59_RS10920 () | 2205887..2206306 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| L0F59_RS10925 () | 2206694..2207170 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| L0F59_RS10930 () | 2207500..2207895 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| L0F59_RS10935 () | 2208578..2209300 | + | 723 | WP_000182072.1 | hypothetical protein | VF |
| L0F59_RS10940 () | 2209585..2209749 | + | 165 | WP_001134856.1 | membrane protein | - |
| L0F59_RS10945 () | 2209973..2210623 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| L0F59_RS10950 () | 2210642..2210833 | - | 192 | WP_000457836.1 | YebW family protein | - |
| L0F59_RS10955 () | 2210944..2211180 | - | 237 | WP_024131108.1 | YebV family protein | - |
| L0F59_RS10960 () | 2211298..2212737 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| L0F59_RS10965 () | 2212815..2215448 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| L0F59_RS10970 () | 2215417..2216700 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| L0F59_RS10975 () | 2216829..2217326 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| L0F59_RS10980 () | 2217424..2218110 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| L0F59_RS10985 () | 2218130..2220178 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| L0F59_RS10990 () | 2220372..2221253 | + | 882 | WP_000984498.1 | protease HtpX | - |
| L0F59_RS10995 () | 2221301..2222674 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| L0F59_RS11000 () | 2222850..2223641 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| L0F59_RS11005 () | 2223853..2224092 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| L0F59_RS11010 () | 2224250..2224393 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| L0F59_RS11015 () | 2224464..2224751 | + | 288 | WP_001000660.1 | YebO family protein | - |
| L0F59_RS11020 () | 2225400..2225543 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| L0F59_RS11025 () | 2225556..2225765 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| L0F59_RS11030 () | 2225985..2227730 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| L0F59_RS11035 () | 2227796..2228605 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| L0F59_RS11040 () | 2228602..2229168 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| L0F59_RS11045 () | 2229578..2230036 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0.002 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.007 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0.001 |