MGE detailed information
MGE type: Prophage MGE length: 38308 bp
Accession: NZ_CP117404 Location: 2075140..2113447 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM085 Replicon: chromosome
Accession: NZ_CP117404 Location: 2075140..2113447 Organism: Salmonella enterica subsp. enterica serovar Typhimurium strain RM085 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PQQ07_RS10030 () | 2071413..2072054 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| PQQ07_RS10035 () | 2072154..2073332 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| PQQ07_RS10040 () | 2073463..2073753 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| PQQ07_RS10045 () | 2073821..2074174 | + | 354 | WP_001042119.1 | protein YebF | - |
| PQQ07_RS10050 () | 2074268..2074927 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| PQQ07_RS10055 () | 2075140..2077191 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| PQQ07_RS10060 () | 2077226..2077924 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| PQQ07_RS10065 () | 2077948..2078604 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| PQQ07_RS10070 () | 2078712..2078942 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| PQQ07_RS10075 () | 2079080..2079454 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| PQQ07_RS10080 () | 2079455..2080330 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| PQQ07_RS10085 () | 2080347..2080700 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2080800..2080945 | - | 146 | - | - | Antitoxin Detail |
| - | 2080840..2080943 | + | 104 | - | - | Toxin Detail |
| PQQ07_RS10090 () | 2081074..2081997 | - | 924 | Protein_1972 | hypothetical protein ; Integrase | Integrase |
| PQQ07_RS10095 () | 2082261..2082722 | - | 462 | Protein_1973 | DNA breaking-rejoining protein | - |
| PQQ07_RS10100 () | 2082711..2082902 | + | 192 | Protein_1974 | glycoside hydrolase family 19 protein | - |
| PQQ07_RS10105 () | 2082956..2083489 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| PQQ07_RS10110 () | 2083746..2083913 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| PQQ07_RS10115 () | 2083978..2084166 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| PQQ07_RS10120 () | 2084221..2084481 | + | 261 | Protein_1978 | DUF1441 family protein | - |
| PQQ07_RS10125 () | 2084696..2085040 | + | 345 | Protein_1979 | macro domain-containing protein | - |
| PQQ07_RS10130 () | 2085050..2085520 | + | 471 | Protein_1980 | tail fiber assembly protein | - |
| PQQ07_RS10135 () | 2085617..2085817 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| PQQ07_RS10140 () | 2086207..2086387 | - | 181 | Protein_1982 | IS3 family transposase | - |
| PQQ07_RS10145 () | 2086387..2086512 | + | 126 | WP_000457876.1 | hypothetical protein | - |
| PQQ07_RS10150 () | 2087026..2087172 | - | 147 | WP_001520350.1 | hypothetical protein | - |
| PQQ07_RS10155 () | 2087166..2087333 | + | 168 | WP_001751917.1 | helix-turn-helix domain-containing protein | - |
| PQQ07_RS10160 () | 2087660..2088274 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| PQQ07_RS10165 () | 2088284..2088442 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| PQQ07_RS10170 () | 2088575..2089489 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| PQQ07_RS10175 () | 2090793..2091215 | - | 423 | Protein_1989 | hypothetical protein ; Integrase | Integrase |
| PQQ07_RS10180 () | 2091285..2092479 | + | 1195 | Protein_1990 | IS256 family transposase IS285 | Transposase |
| PQQ07_RS10185 () | 2092625..2092765 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| PQQ07_RS10190 () | 2092931..2093200 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| PQQ07_RS10195 () | 2093570..2093989 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| PQQ07_RS10200 () | 2094377..2094853 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| PQQ07_RS10205 () | 2095183..2095578 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| PQQ07_RS10210 () | 2096262..2096984 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| PQQ07_RS10215 () | 2097269..2097433 | + | 165 | WP_001134856.1 | membrane protein | - |
| PQQ07_RS10220 () | 2097657..2098307 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| PQQ07_RS10225 () | 2098326..2098517 | - | 192 | WP_000457836.1 | YebW family protein | - |
| PQQ07_RS10230 () | 2098628..2098864 | - | 237 | WP_024131108.1 | YebV family protein | - |
| PQQ07_RS10235 () | 2098982..2100421 | - | 1440 | WP_274896328.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| PQQ07_RS10240 () | 2100499..2103132 | - | 2634 | WP_001535256.1 | Intermembrane transport protein YebT | VF |
| PQQ07_RS10245 () | 2103101..2104384 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| PQQ07_RS10250 () | 2104513..2105010 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| PQQ07_RS10255 () | 2105108..2105794 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| PQQ07_RS10260 () | 2105814..2107856 | + | 2043 | WP_274896329.1 | carboxy terminal-processing peptidase | - |
| PQQ07_RS10265 () | 2108054..2108935 | + | 882 | WP_000984498.1 | protease HtpX | - |
| PQQ07_RS10270 () | 2108983..2110356 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| PQQ07_RS10275 () | 2110532..2111323 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| PQQ07_RS10280 () | 2111535..2111774 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| PQQ07_RS10285 () | 2111932..2112075 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| PQQ07_RS10290 () | 2112146..2112433 | + | 288 | WP_001000660.1 | YebO family protein | - |
| PQQ07_RS10295 () | 2113082..2113225 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| PQQ07_RS10300 () | 2113238..2113447 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| PQQ07_RS10305 () | 2113667..2115412 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| PQQ07_RS10310 () | 2115478..2116287 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| PQQ07_RS10315 () | 2116284..2116850 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| PQQ07_RS10320 () | 2117260..2117717 | - | 458 | Protein_2018 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |