MGE detailed information
MGE type: Prophage MGE length: 38317 bp
Accession: NZ_AP023309 Location: 2054059..2092375 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4578 Replicon: chromosome
Accession: NZ_AP023309 Location: 2054059..2092375 Organism: Salmonella enterica subsp. enterica serovar 4[5]12:i:- strain L-4578 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K5680_RS09945 () | 2050332..2050973 | + | 642 | WP_000800497.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
| K5680_RS09950 () | 2051073..2052251 | - | 1179 | WP_000173431.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| K5680_RS09955 () | 2052382..2052672 | + | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| K5680_RS09960 () | 2052740..2053093 | + | 354 | WP_001042119.1 | protein YebF | - |
| K5680_RS09965 () | 2053187..2053846 | + | 660 | WP_000024706.1 | tellurite resistance TerB family protein | - |
| K5680_RS09970 () | 2054059..2056110 | + | 2052 | WP_000936999.1 | oligopeptidase B | - |
| K5680_RS09975 () | 2056145..2056843 | - | 699 | WP_000944282.1 | exodeoxyribonuclease X | - |
| K5680_RS09980 () | 2056867..2057523 | - | 657 | WP_000100258.1 | carbon-nitrogen hydrolase family protein | - |
| K5680_RS09985 () | 2057631..2057861 | - | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| K5680_RS09990 () | 2057999..2058373 | + | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| K5680_RS09995 () | 2058374..2059249 | + | 876 | WP_000979702.1 | copper homeostasis membrane protein CopD | - |
| K5680_RS10000 () | 2059266..2059619 | + | 354 | WP_000722368.1 | YebY family protein | - |
| - | 2059719..2059864 | - | 146 | - | - | Antitoxin Detail |
| - | 2059759..2059862 | + | 104 | - | - | Toxin Detail |
| K5680_RS10005 () | 2059993..2060916 | - | 924 | Protein_1966 | hypothetical protein ; Integrase | Integrase |
| K5680_RS25030 () | 2061180..2061641 | - | 462 | Protein_1967 | DNA breaking-rejoining protein | - |
| K5680_RS10015 () | 2061630..2061821 | + | 192 | Protein_1968 | glycoside hydrolase family 19 protein | - |
| K5680_RS10020 () | 2061875..2062408 | + | 534 | WP_001050882.1 | DUF2514 domain-containing protein | - |
| K5680_RS10025 () | 2062665..2062832 | - | 168 | WP_000789530.1 | lytic enzyme | - |
| K5680_RS10030 () | 2062897..2063085 | - | 189 | WP_001521334.1 | hypothetical protein | - |
| K5680_RS10035 () | 2063140..2063400 | + | 261 | Protein_1972 | DUF1441 family protein | - |
| K5680_RS10040 () | 2063615..2063959 | + | 345 | Protein_1973 | macro domain-containing protein | - |
| K5680_RS10045 () | 2063969..2064439 | + | 471 | Protein_1974 | tail fiber assembly protein | - |
| K5680_RS10050 () | 2064536..2064736 | - | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| K5680_RS25035 () | 2065126..2065306 | - | 181 | Protein_1976 | IS3 family transposase | - |
| K5680_RS10055 () | 2065297..2065398 | + | 102 | Protein_1977 | arsenic transporter | - |
| K5680_RS25040 () | 2066020..2066252 | + | 233 | Protein_1978 | helix-turn-helix domain-containing protein | - |
| K5680_RS10070 () | 2066579..2067193 | - | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| K5680_RS10075 () | 2067203..2067361 | - | 159 | WP_000480735.1 | DUF5993 family protein | - |
| K5680_RS10080 () | 2067494..2068408 | - | 915 | WP_001233446.1 | DMT family transporter | - |
| K5680_RS10085 () | 2069721..2070143 | - | 423 | Protein_1982 | hypothetical protein ; Integrase | Integrase |
| K5680_RS10090 () | 2070213..2071407 | + | 1195 | Protein_1983 | IS256 family transposase IS285 | Transposase |
| K5680_RS10095 () | 2071553..2071693 | - | 141 | WP_001617922.1 | hypothetical protein | - |
| K5680_RS10100 () | 2071859..2072128 | - | 270 | WP_001752421.1 | hypothetical protein | - |
| K5680_RS10105 () | 2072498..2072917 | + | 420 | WP_000354408.1 | GNAT family N-acetyltransferase | - |
| K5680_RS10110 () | 2073305..2073781 | - | 477 | WP_000030934.1 | hypothetical protein | - |
| K5680_RS10115 () | 2074111..2074506 | - | 396 | WP_000422882.1 | DUF1398 domain-containing protein | - |
| K5680_RS10120 () | 2075189..2075911 | + | 723 | WP_000182072.1 | Guanine nucleotide exchange factor sopE2 | VF |
| K5680_RS10125 () | 2076196..2076360 | + | 165 | WP_001134856.1 | membrane protein | - |
| K5680_RS10130 () | 2076584..2077234 | + | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| K5680_RS10135 () | 2077253..2077444 | - | 192 | WP_000457836.1 | YebW family protein | - |
| K5680_RS10140 () | 2077555..2077791 | - | 237 | WP_024131108.1 | YebV family protein | - |
| K5680_RS10145 () | 2077909..2079348 | - | 1440 | WP_001542138.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| K5680_RS10150 () | 2079426..2082059 | - | 2634 | WP_001535256.1 | hypothetical protein | VF |
| K5680_RS10155 () | 2082028..2083311 | - | 1284 | WP_001207294.1 | membrane integrity lipid transport subunit YebS | - |
| K5680_RS10160 () | 2083440..2083937 | + | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| K5680_RS10165 () | 2084035..2084721 | + | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| K5680_RS10170 () | 2084741..2086789 | + | 2049 | WP_033567178.1 | carboxy terminal-processing peptidase | - |
| K5680_RS10175 () | 2086982..2087863 | + | 882 | WP_000984498.1 | protease HtpX | - |
| K5680_RS10180 () | 2087911..2089284 | - | 1374 | WP_000416128.1 | MFS transporter | - |
| K5680_RS10185 () | 2089460..2090251 | + | 792 | WP_001262195.1 | DNA-binding transcriptional regulator KdgR | - |
| K5680_RS10190 () | 2090463..2090702 | - | 240 | WP_001236777.1 | invasion protein YobH | - |
| K5680_RS10195 () | 2090860..2091003 | + | 144 | WP_000714547.1 | PhoP/PhoQ regulator MgrB | - |
| K5680_RS10200 () | 2091074..2091361 | + | 288 | WP_001000660.1 | YebO family protein | - |
| K5680_RS10205 () | 2092010..2092153 | + | 144 | WP_001537930.1 | DUF2627 domain-containing protein | - |
| K5680_RS10210 () | 2092166..2092375 | + | 210 | WP_001062678.1 | transcription antiterminator/RNA stability regulator CspE | - |
| K5680_RS10215 () | 2092595..2094340 | + | 1746 | WP_000730322.1 | peptidoglycan glycosyltransferase FtsI | - |
| K5680_RS10220 () | 2094406..2095215 | + | 810 | WP_000010923.1 | 23S rRNA (guanine(745)-N(1))-methyltransferase | - |
| K5680_RS10225 () | 2095212..2095778 | - | 567 | WP_001518359.1 | manganese efflux pump MntP | - |
| K5680_RS10230 () | 2096188..2096646 | - | 459 | WP_000156280.1 | DUF986 family protein | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 | Prophage | TA20681 | NC_003197 | 1935544..1973853 | 0 | |
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.005 | |
| Salmonella enterica subsp. enterica serovar Typhimurium strain NCTC12023 | Prophage | TA297229 | UFRD01000002 | 813036..851340 | 0 |