MGE detailed information
MGE type: Prophage MGE length: 30657 bp
Accession: NZ_CP085981 Location: 1234487..1265143 Organism: Salmonella enterica strain SZL 30 Replicon: chromosome
Accession: NZ_CP085981 Location: 1234487..1265143 Organism: Salmonella enterica strain SZL 30 Replicon: chromosome
Gene structure
The 5 kb flanking regions of this MGE are displayed.
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LJY16_RS06395 () | 1229923..1231296 | + | 1374 | WP_000416139.1 | MFS transporter | - |
| LJY16_RS06400 () | 1231344..1232225 | - | 882 | WP_000984498.1 | protease HtpX | - |
| LJY16_RS06405 () | 1232419..1234467 | - | 2049 | WP_001091237.1 | carboxy terminal-processing peptidase | - |
| LJY16_RS06410 () | 1234487..1235173 | - | 687 | WP_000431401.1 | RNA chaperone ProQ | - |
| LJY16_RS06415 () | 1235271..1235768 | - | 498 | WP_001518229.1 | GAF domain-containing protein | - |
| LJY16_RS06420 () | 1235897..1237180 | + | 1284 | WP_001207293.1 | membrane integrity lipid transport subunit YebS | - |
| LJY16_RS06425 () | 1237149..1239782 | + | 2634 | WP_001529852.1 | hypothetical protein | VF |
| LJY16_RS06430 () | 1239860..1241299 | + | 1440 | WP_023993322.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| LJY16_RS06435 () | 1241417..1241653 | + | 237 | WP_024131167.1 | YebV family protein | - |
| LJY16_RS06440 () | 1241764..1241955 | + | 192 | WP_000457838.1 | DUF1482 family protein | - |
| LJY16_RS06445 () | 1241974..1242624 | - | 651 | WP_000986176.1 | protein-serine/threonine phosphatase | - |
| LJY16_RS06450 () | 1242849..1243013 | - | 165 | WP_001134857.1 | hypothetical protein | - |
| LJY16_RS06455 () | 1243298..1244020 | - | 723 | WP_000182074.1 | Guanine nucleotide exchange factor sopE2 | VF |
| LJY16_RS06460 () | 1244704..1245099 | + | 396 | WP_000422890.1 | DUF1398 domain-containing protein | - |
| LJY16_RS06465 () | 1245429..1245905 | + | 477 | WP_023218584.1 | hypothetical protein | - |
| LJY16_RS06470 () | 1246292..1246711 | - | 420 | WP_000354407.1 | GNAT family N-acetyltransferase | - |
| LJY16_RS06475 () | 1247084..1247353 | + | 270 | WP_012664556.1 | hypothetical protein | - |
| LJY16_RS06480 () | 1247519..1247659 | + | 141 | WP_001576018.1 | hypothetical protein | - |
| LJY16_RS06485 () | 1247805..1249013 | - | 1209 | WP_023993323.1 | IS256 family transposase ISEc39 | Transposase |
| LJY16_RS06490 () | 1249083..1249506 | + | 424 | Protein_1201 | tyrosine-type recombinase/integrase | - |
| LJY16_RS06495 () | 1250796..1251710 | + | 915 | WP_001233445.1 | DMT family transporter | - |
| LJY16_RS06500 () | 1251843..1252001 | + | 159 | WP_000480735.1 | DUF5993 family protein | - |
| LJY16_RS06505 () | 1252011..1252625 | + | 615 | WP_000848069.1 | disulfide bond formation protein B | - |
| LJY16_RS06510 () | 1252952..1253184 | - | 233 | Protein_1205 | helix-turn-helix domain-containing protein | - |
| LJY16_RS06515 () | 1253806..1253907 | - | 102 | Protein_1206 | arsenic transporter | - |
| LJY16_RS06520 () | 1253898..1254078 | + | 181 | Protein_1207 | IS3 family transposase | - |
| LJY16_RS06525 () | 1254468..1254668 | + | 201 | WP_010989029.1 | PagK family vesicle-borne virulence factor | - |
| LJY16_RS06530 () | 1254765..1255276 | - | 512 | Protein_1209 | tail fiber assembly protein | - |
| LJY16_RS24375 () | 1255289..1255576 | - | 288 | Protein_1210 | macro domain-containing protein | - |
| LJY16_RS24380 () | 1255586..1255801 | - | 216 | Protein_1211 | shikimate transporter | - |
| LJY16_RS06540 () | 1255803..1256063 | - | 261 | Protein_1212 | DUF1441 family protein | - |
| LJY16_RS06545 () | 1256371..1256538 | + | 168 | WP_000789529.1 | lytic enzyme | - |
| LJY16_RS06550 () | 1256795..1257328 | - | 534 | WP_001050883.1 | DUF2514 domain-containing protein | - |
| LJY16_RS06555 () | 1257382..1257573 | - | 192 | Protein_1215 | glycoside hydrolase family 19 protein | - |
| LJY16_RS06560 () | 1257562..1258023 | + | 462 | Protein_1216 | DNA breaking-rejoining protein | - |
| LJY16_RS06565 () | 1258287..1259180 | + | 894 | Protein_1217 | hypothetical protein ; Integrase | Integrase |
| - | 1259338..1259481 | + | 144 | - | - | Antitoxin Detail |
| - | 1259340..1259443 | - | 104 | - | - | Toxin Detail |
| LJY16_RS06570 () | 1259583..1259936 | - | 354 | WP_000722368.1 | YebY family protein | - |
| LJY16_RS06575 () | 1259953..1260828 | - | 876 | WP_000979694.1 | copper homeostasis membrane protein CopD | - |
| LJY16_RS06580 () | 1260829..1261203 | - | 375 | WP_000168393.1 | CopC domain-containing protein YobA | - |
| LJY16_RS06585 () | 1261341..1261571 | + | 231 | WP_000856224.1 | DNA polymerase III subunit theta | - |
| LJY16_RS06590 () | 1261679..1262335 | + | 657 | WP_000100256.1 | nitrilase-related carbon-nitrogen hydrolase | - |
| LJY16_RS06595 () | 1262359..1263057 | + | 699 | WP_000944278.1 | exodeoxyribonuclease X | - |
| LJY16_RS06600 () | 1263092..1265143 | - | 2052 | WP_227945744.1 | oligopeptidase B | - |
| LJY16_RS06605 () | 1265357..1266016 | - | 660 | WP_023993328.1 | tellurite resistance TerB family protein | - |
| LJY16_RS06610 () | 1266110..1266463 | - | 354 | WP_001042123.1 | protein YebF | - |
| LJY16_RS06615 () | 1266531..1266821 | - | 291 | WP_000257723.1 | DNA damage-inducible protein YebG | - |
| LJY16_RS06620 () | 1266952..1268130 | + | 1179 | WP_000173429.1 | formate-dependent phosphoribosylglycinamide formyltransferase | - |
| LJY16_RS06625 () | 1268230..1268871 | - | 642 | WP_000800494.1 | bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase | - |
Similar MGE(s)
Similar MGE(s) is defined as other TA-related MGE(s) with Mash distance < 0.01 to this MGE.
| Detail | Organism | MGE type | Related TA | Genome accession | Coordinates | Mash distance |
|---|---|---|---|---|---|---|
| Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S | Prophage | TA26047 | NC_016856 | 1954607..1985261 | 0.009 |